D Puthier

Affiliations

Aix Marseille Univ, INSERM, TAGC, UMR U1090, Marseille, France.

Publications (25)

A comprehensive catalog of LncRNAs expressed in T-cell acute lymphoblastic leukemia.

Leukemia & lymphoma

Avec: Yasmina Kermezli , Wiam Saadi , Mohamed Belhocine , Eve-Lyne Mathieu , Marc-Antoine Garibal , Vahid Asnafi , Mourad Aribi , Salvatore Spicuglia , Denis Puthier

ATAD2 controls chromatin-bound HIRA turnover.

Life science alliance

Avec: Tao Wang , Daniel Perazza , Fayçal Boussouar , Matteo Cattaneo , Alexandre Bougdour , Florent Chuffart , Sophie Barral , Alexandra Vargas , Ariadni Liakopoulou , Denis Puthier , Lisa Bargier , Yuichi Morozumi , Mahya Jamshidikia , Isabel Garcia-Saez , Carlo Petosa , Sophie Rousseaux , André Verdel , Saadi Khochbin

Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes.

Genome research

Avec: Mohamed Belhocine , Mathieu Simonin , José David Abad Flores , Agata Cieslak , Iris Manosalva , Lydie Pradel , Charlotte Smith , Eve-Lyne Mathieu , Guillaume Charbonnier , Joost H A Martens , Hendrik G Stunnenberg , Muhammad Ahmad Maqbool , Aneta Mikulasova , Lisa J Russell , Daniel Rico , Denis Puthier , Pierre Ferrier , Vahid Asnafi , Salvatore Spicuglia

Cross-species analysis of differential transcript usage in humans and chickens with fatty liver disease.

Veterinary world

Avec: Kaj Chokeshaiusaha , Thanida Sananmuang , Denis Puthier , Catherine Nguyen

Explore, edit and leverage genomic annotations using Python GTF toolkit.

Bioinformatics (Oxford, England)

Avec: F Lopez , G Charbonnier , Y Kermezli , M Belhocine , Q Ferré , N Zweig , M Aribi , A Gonzalez , S Spicuglia , D Puthier

A novel cross-species differential tumor classification method based on exosome-derived microRNA biomarkers established by human-dog lymphoid and mammary tumor cell lines' transcription profiles.

Veterinary world

Avec: Kaj Chokeshaiusaha , Thanida Sananmuang , Denis Puthier , Catherine Nguyen

Single-Cell Transcriptome Analysis of Acute Myeloid Leukemia Cells Using Methanol Fixation and Cryopreservation.

Diseases (Basel, Switzerland)

Avec: Lamia Madaci , Charlyne Gard , Sébastien Nin , Alexandre Sarrabay , Céline Baier , Geoffroy Venton , Pascal Rihet , Denis Puthier , Béatrice Loriod , Régis Costello

Epigenetic regulation of transcription factor binding motifs promotes Th1 response in Chagas disease cardiomyopathy.

Frontiers in immunology

Avec: Pauline Brochet , Barbara Maria Ianni , Laurie Laugier , Amanda Farage Frade , João Paulo Silva Nunes , Priscila Camillo Teixeira , Charles Mady , Ludmila Rodrigues Pinto Ferreira , Quentin Ferré , Ronaldo Honorato Barros Santos , Andreia Kuramoto , Sandrine Cabantous , Samuel Steffen , Antonio Noedir Stolf , Pablo Pomerantzeff , Alfredo Inacio Fiorelli , Edimar Alcides Bocchi , Cristina Wide Pissetti , Bruno Saba , Darlan da Silva Cândido , Fabrício C Dias , Marcelo Ferraz Sampaio , Fabio Antônio Gaiotto , José Antonio Marin-Neto , Abílio Fragata , Ricardo Costa Fernandes Zaniratto , Sergio Siqueira , Giselle De Lima Peixoto , Vagner Oliveira-Carvalho Rigaud , Fernando Bacal , Paula Buck , Rafael Ribeiro Almeida , Hui Tzu Lin-Wang , André Schmidt , Martino Martinelli , Mario Hiroyuki Hirata , Eduardo Antonio Donadi , Alexandre Costa Pereira , Virmondes Rodrigues Junior , Denis Puthier , Jorge Kalil , Lionel Spinelli , Edecio Cunha-Neto , Christophe Chevillard

The Contribution of Multiplexing Single Cell RNA Sequencing in Acute Myeloid Leukemia.

Diseases (Basel, Switzerland)

Avec: Lamia Madaci , Charlyne Gard , Sébastien Nin , Geoffroy Venton , Pascal Rihet , Denis Puthier , Béatrice Loriod , Régis Costello

Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene.

PloS one

Avec: Jaafar Alomairi , Anne M Molitor , Nori Sadouni , Saadat Hussain , Magali Torres , Wiam Saadi , Lan T M Dao , Guillaume Charbonnier , David Santiago-Algarra , Jean Christophe Andrau , Denis Puthier , Tom Sexton , Salvatore Spicuglia

Epigenetic Silencing Affects l-Asparaginase Sensitivity and Predicts Outcome in T-ALL.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Aurore Touzart , Etienne Lengliné , Mehdi Latiri , Mohamed Belhocine , Charlotte Smith , Xavier Thomas , Salvatore Spicuglia , Denis Puthier , Françoise Pflumio , Thibaut Leguay , Carlos Graux , Yves Chalandon , Françoise Huguet , Stéphane Leprêtre , Norbert Ifrah , Hervé Dombret , Elizabeth Macintyre , Mathilde Hunault , Nicolas Boissel , Vahid Asnafi

Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders.

BMC bioinformatics

Avec: Quentin Ferré , Jeanne Chèneby , Denis Puthier , Cécile Capponi , Benoît Ballester

Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution.

Cell reports

Avec: Mengqing Gao , Jin Wang , Sophie Rousseaux , Minjia Tan , Lulu Pan , Lijun Peng , Sisi Wang , Wenqian Xu , Jiayi Ren , Yuanfang Liu , Martin Spinck , Sophie Barral , Tao Wang , Florent Chuffart , Ekaterina Bourova-Flin , Denis Puthier , Sandrine Curtet , Lisa Bargier , Zhongyi Cheng , Heinz Neumann , Jian Li , Yingming Zhao , Jian-Qing Mi , Saadi Khochbin

NAR genomics and bioinformatics

Avec: Quentin Ferré , Cécile Capponi , Denis Puthier

IL-12 Signaling Contributes to the Reprogramming of Neonatal CD8

Frontiers in immunology

Avec: Darely Y Gutiérrez-Reyna , Alejandra Cedillo-Baños , Linda A Kempis-Calanis , Oscar Ramírez-Pliego , Lisa Bargier , Denis Puthier , Jose D Abad-Flores , Morgane Thomas-Chollier , Denis Thieffry , Alejandra Medina-Rivera , Salvatore Spicuglia , Maria A Santana

Differential DNA methylation analysis across the promoter regions using methylated DNA immunoprecipitation sequencing profiling of porcine loin muscle.

Veterinary world

Avec: Kaj Chokeshaiusaha , Denis Puthier , Thanida Sananmuang , Em-On Olanratmanee , Catherine Nguyen , Roongtham Kedkovid

Factor Analysis for Bicluster Acquisition (FABIA) revealed vincristine-sensitive transcript pattern of canine transmissible venereal tumors.

Heliyon

Avec: K Chokeshaiusaha , D Puthier , C Nguyen , P Sudjaidee , T Sananmuang

Genetic Predisposition to the Mortality in Septic Shock Patients: From GWAS to the Identification of a Regulatory Variant Modulating the Activity of a

International journal of molecular sciences

Avec: Florian Rosier , Audrey Brisebarre , Claire Dupuis , Sabrina Baaklini , Denis Puthier , Christine Brun , Lydie C Pradel , Pascal Rihet , Didier Payen

Differential transcript usage across mammalian oocytes at the germinal vesicle and metaphase II stages.

Theriogenology

Avec: Thanida Sananmuang , Denis Puthier , Catherine Nguyen , Kaj Chokeshaiusaha

OLOGRAM: Determining significance of total overlap length between genomic regions sets.

Bioinformatics (Oxford, England)

Avec: Q Ferré , G Charbonnier , N Sadouni , F Lopez , Y Kermezli , S Spicuglia , C Capponi , B Ghattas , D Puthier

A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation.

Scientific reports

Avec: Wiam Saadi , Yasmina Kermezli , Lan T M Dao , Evelyne Mathieu , David Santiago-Algarra , Iris Manosalva , Magali Torres , Mohamed Belhocine , Lydie Pradel , Beatrice Loriod , Mourad Aribi , Denis Puthier , Salvatore Spicuglia

Novel classifier orthologs of bovine and human oocytes matured in different melatonin environments.

Theriogenology

Avec: Thanida Sananmuang , Denis Puthier , Catherine Nguyen , Kaj Chokeshaiusaha

Blueprint of human thymopoiesis reveals molecular mechanisms of stage-specific TCR enhancer activation.

The Journal of experimental medicine

Avec: Agata Cieslak , Guillaume Charbonnier , Melania Tesio , Eve-Lyne Mathieu , Mohamed Belhocine , Aurore Touzart , Charlotte Smith , Guillaume Hypolite , Guillaume P Andrieu , Joost H A Martens , Eva Janssen-Megens , Marta Gut , Ivo Gut , Nicolas Boissel , Arnaud Petit , Denis Puthier , Elizabeth Macintyre , Hendrik G Stunnenberg , Salvatore Spicuglia , Vahid Asnafi

RNA-Guided Genomic Localization of H2A.L.2 Histone Variant.

Cells

Avec: Naghmeh Hoghoughi , Sophie Barral , Sandrine Curtet , Florent Chuffart , Guillaume Charbonnier , Denis Puthier , Thierry Buchou , Sophie Rousseaux , Saadi Khochbin

Nucleoside diphosphate kinases 1 and 2 regulate a protective liver response to a high-fat diet.

Science advances

Avec: Domenico Iuso , Isabel Garcia-Saez , Yohann Couté , Yoshiki Yamaryo-Botté , Elisabetta Boeri Erba , Annie Adrait , Nour Zeaiter , Malgorzata Tokarska-Schlattner , Zuzana Macek Jilkova , Fayçal Boussouar , Sophie Barral , Luca Signor , Karine Couturier , Azadeh Hajmirza , Florent Chuffart , Ekaterina Bourova-Flin , Anne-Laure Vitte , Lisa Bargier , Denis Puthier , Thomas Decaens , Sophie Rousseaux , Cyrille Botté , Uwe Schlattner , Carlo Petosa , Saadi Khochbin

Réseau de co-auteurs

Denis Puthier 22 collaborations

Salvatore Spicuglia 7 collaborations

Mohamed Belhocine 5 collaborations

Kaj Chokeshaiusaha 5 collaborations

Thanida Sananmuang 5 collaborations

Catherine Nguyen 5 collaborations

Vahid Asnafi 4 collaborations

Florent Chuffart 4 collaborations

Sophie Barral 4 collaborations

Lisa Bargier 4 collaborations

Sophie Rousseaux 4 collaborations

Saadi Khochbin 4 collaborations

Guillaume Charbonnier 4 collaborations

Wiam Saadi 3 collaborations

Eve-Lyne Mathieu 3 collaborations

Charlotte Smith 3 collaborations

Pascal Rihet 3 collaborations

Quentin Ferré 3 collaborations

Yasmina Kermezli 2 collaborations

Mourad Aribi 2 collaborations

Tao Wang 2 collaborations

Fayçal Boussouar 2 collaborations

Isabel Garcia-Saez 2 collaborations

Carlo Petosa 2 collaborations

Agata Cieslak 2 collaborations

Iris Manosalva 2 collaborations

Lydie Pradel 2 collaborations

Joost H A Martens 2 collaborations

Hendrik G Stunnenberg 2 collaborations

F Lopez 2 collaborations

G Charbonnier 2 collaborations

Y Kermezli 2 collaborations

Q Ferré 2 collaborations

S Spicuglia 2 collaborations

Lamia Madaci 2 collaborations

Charlyne Gard 2 collaborations

Sébastien Nin 2 collaborations

Geoffroy Venton 2 collaborations

Béatrice Loriod 2 collaborations

Régis Costello 2 collaborations

Magali Torres 2 collaborations

Lan T M Dao 2 collaborations

David Santiago-Algarra 2 collaborations

Aurore Touzart 2 collaborations

Elizabeth Macintyre 2 collaborations

Nicolas Boissel 2 collaborations

Cécile Capponi 2 collaborations

Ekaterina Bourova-Flin 2 collaborations

Sandrine Curtet 2 collaborations

Marc-Antoine Garibal 1 collaboration

Daniel Perazza 1 collaboration

Matteo Cattaneo 1 collaboration

Alexandre Bougdour 1 collaboration

Alexandra Vargas 1 collaboration

Ariadni Liakopoulou 1 collaboration

Yuichi Morozumi 1 collaboration

Mahya Jamshidikia 1 collaboration

André Verdel 1 collaboration

Mathieu Simonin 1 collaboration

José David Abad Flores 1 collaboration

Muhammad Ahmad Maqbool 1 collaboration

Aneta Mikulasova 1 collaboration

Lisa J Russell 1 collaboration

Daniel Rico 1 collaboration

Pierre Ferrier 1 collaboration

M Belhocine 1 collaboration

N Zweig 1 collaboration

M Aribi 1 collaboration

A Gonzalez 1 collaboration

Alexandre Sarrabay 1 collaboration

Céline Baier 1 collaboration

Pauline Brochet 1 collaboration

Barbara Maria Ianni 1 collaboration

Laurie Laugier 1 collaboration

Amanda Farage Frade 1 collaboration

João Paulo Silva Nunes 1 collaboration

Priscila Camillo Teixeira 1 collaboration

Charles Mady 1 collaboration

Ludmila Rodrigues Pinto Ferreira 1 collaboration

Ronaldo Honorato Barros Santos 1 collaboration

Andreia Kuramoto 1 collaboration

Sandrine Cabantous 1 collaboration

Samuel Steffen 1 collaboration

Antonio Noedir Stolf 1 collaboration

Pablo Pomerantzeff 1 collaboration

Alfredo Inacio Fiorelli 1 collaboration

Edimar Alcides Bocchi 1 collaboration

Cristina Wide Pissetti 1 collaboration

Bruno Saba 1 collaboration

Darlan da Silva Cândido 1 collaboration

Fabrício C Dias 1 collaboration

Marcelo Ferraz Sampaio 1 collaboration

Fabio Antônio Gaiotto 1 collaboration

José Antonio Marin-Neto 1 collaboration

Abílio Fragata 1 collaboration

Ricardo Costa Fernandes Zaniratto 1 collaboration

Sergio Siqueira 1 collaboration

Giselle De Lima Peixoto 1 collaboration

Vagner Oliveira-Carvalho Rigaud 1 collaboration

Fernando Bacal 1 collaboration

Paula Buck 1 collaboration

Rafael Ribeiro Almeida 1 collaboration

Hui Tzu Lin-Wang 1 collaboration

André Schmidt 1 collaboration

Martino Martinelli 1 collaboration

Mario Hiroyuki Hirata 1 collaboration

Eduardo Antonio Donadi 1 collaboration

Alexandre Costa Pereira 1 collaboration

Virmondes Rodrigues Junior 1 collaboration

Jorge Kalil 1 collaboration

Lionel Spinelli 1 collaboration

Edecio Cunha-Neto 1 collaboration

Christophe Chevillard 1 collaboration

Jaafar Alomairi 1 collaboration

Anne M Molitor 1 collaboration

Nori Sadouni 1 collaboration

Saadat Hussain 1 collaboration

Jean Christophe Andrau 1 collaboration

Tom Sexton 1 collaboration

Etienne Lengliné 1 collaboration

Mehdi Latiri 1 collaboration

Xavier Thomas 1 collaboration

Françoise Pflumio 1 collaboration

Thibaut Leguay 1 collaboration

Carlos Graux 1 collaboration

Yves Chalandon 1 collaboration

Françoise Huguet 1 collaboration

Stéphane Leprêtre 1 collaboration

Norbert Ifrah 1 collaboration

Hervé Dombret 1 collaboration

Mathilde Hunault 1 collaboration

Jeanne Chèneby 1 collaboration

Benoît Ballester 1 collaboration

Mengqing Gao 1 collaboration

Jin Wang 1 collaboration

Minjia Tan 1 collaboration

Lulu Pan 1 collaboration

Lijun Peng 1 collaboration

Sisi Wang 1 collaboration

Wenqian Xu 1 collaboration

Jiayi Ren 1 collaboration

Yuanfang Liu 1 collaboration

Martin Spinck 1 collaboration

Zhongyi Cheng 1 collaboration

Heinz Neumann 1 collaboration

Jian Li 1 collaboration

Yingming Zhao 1 collaboration

Jian-Qing Mi 1 collaboration

Darely Y Gutiérrez-Reyna 1 collaboration

Alejandra Cedillo-Baños 1 collaboration

Linda A Kempis-Calanis 1 collaboration

Oscar Ramírez-Pliego 1 collaboration

Jose D Abad-Flores 1 collaboration

Morgane Thomas-Chollier 1 collaboration

Denis Thieffry 1 collaboration

Alejandra Medina-Rivera 1 collaboration

Maria A Santana 1 collaboration

Em-On Olanratmanee 1 collaboration

Roongtham Kedkovid 1 collaboration

K Chokeshaiusaha 1 collaboration

C Nguyen 1 collaboration

P Sudjaidee 1 collaboration

T Sananmuang 1 collaboration

Florian Rosier 1 collaboration

Audrey Brisebarre 1 collaboration

Claire Dupuis 1 collaboration

Sabrina Baaklini 1 collaboration

Christine Brun 1 collaboration

Lydie C Pradel 1 collaboration

Didier Payen 1 collaboration

N Sadouni 1 collaboration

C Capponi 1 collaboration

B Ghattas 1 collaboration

Evelyne Mathieu 1 collaboration

Beatrice Loriod 1 collaboration

Melania Tesio 1 collaboration

Guillaume Hypolite 1 collaboration

Guillaume P Andrieu 1 collaboration

Eva Janssen-Megens 1 collaboration

Marta Gut 1 collaboration

Ivo Gut 1 collaboration

Arnaud Petit 1 collaboration

Naghmeh Hoghoughi 1 collaboration

Thierry Buchou 1 collaboration

Domenico Iuso 1 collaboration

Yohann Couté 1 collaboration

Yoshiki Yamaryo-Botté 1 collaboration

Elisabetta Boeri Erba 1 collaboration

Annie Adrait 1 collaboration

Nour Zeaiter 1 collaboration

Malgorzata Tokarska-Schlattner 1 collaboration

Zuzana Macek Jilkova 1 collaboration

Luca Signor 1 collaboration

Karine Couturier 1 collaboration

Azadeh Hajmirza 1 collaboration

Anne-Laure Vitte 1 collaboration

Thomas Decaens 1 collaboration

Cyrille Botté 1 collaboration

Uwe Schlattner 1 collaboration