Jonathan Dushoff

Affiliations

Department of Biology and M. G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON.

Publications (37)

The need for linked genomic surveillance of SARS-CoV-2.

Canada communicable disease report = Releve des maladies transmissibles au Canada

Avec: Caroline Colijn , David Jd Earn , Jonathan Dushoff , Nicholas H Ogden , Michael Li , Natalie Knox , Gary Van Domselaar , Kristyn Franklin , Gordon Jolly , Sarah P Otto

Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Sang Woo Park , Kaiyuan Sun , Sam Abbott , Ron Sender , Yinon M Bar-On , Joshua S Weitz , Sebastian Funk , Bryan T Grenfell , Jantien A Backer , Jacco Wallinga , Cecile Viboud , Jonathan Dushoff

Incubation Period and Serial Interval of Mpox in 2022 Global Outbreak Compared with Historical Estimates.

Emerging infectious diseases

Avec: Luis Ponce , Natalie M Linton , Wu Han Toh , Hao-Yuan Cheng , Robin N Thompson , Andrei R Akhmetzhanov , Jonathan Dushoff

Modeling shield immunity to reduce COVID-19 epidemic spread.

Nature medicine

Avec: Joshua S Weitz , Stephen J Beckett , Ashley R Coenen , David Demory , Marian Dominguez-Mirazo , Jonathan Dushoff , Chung-Yin Leung , Guanlin Li , Andreea Măgălie , Sang Woo Park , Rogelio Rodriguez-Gonzalez , Shashwat Shivam , Conan Y Zhao

Calibration of individual-based models to epidemiological data: A systematic review.

PLoS computational biology

Avec: C Marijn Hazelbag , Jonathan Dushoff , Emanuel M Dominic , Zinhle E Mthombothi , Wim Delva

When to be temperate: on the fitness benefits of lysis vs. lysogeny.

Virus evolution

Avec: Guanlin Li , Michael H Cortez , Jonathan Dushoff , Joshua S Weitz

How time-scale differences in asymptomatic and symptomatic transmission shape SARS-CoV-2 outbreak dynamics.

Epidemics

Avec: Jeremy D Harris , Sang Woo Park , Jonathan Dushoff , Joshua S Weitz

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases.

PLoS computational biology

Avec: Kelly Charniga , Sang Woo Park , Andrei R Akhmetzhanov , Anne Cori , Jonathan Dushoff , Sebastian Funk , Katelyn M Gostic , Natalie M Linton , Adrian Lison , Christopher E Overton , Juliet R C Pulliam , Thomas Ward , Simon Cauchemez , Sam Abbott

Potential roles of social distancing in mitigating the spread of coronavirus disease 2019 (COVID-19) in South Korea.

medRxiv : the preprint server for health sciences

Avec: Sang Woo Park , Kaiyuan Sun , Cécile Viboud , Bryan T Grenfell , Jonathan Dushoff

A practical generation-interval-based approach to inferring the strength of epidemics from their speed.

Epidemics

Avec: Sang Woo Park , David Champredon , Joshua S Weitz , Jonathan Dushoff

Male and female bees show large differences in floral preference.

PloS one

Avec: Michael Roswell , Jonathan Dushoff , Rachael Winfree

Awareness-driven behavior changes can shift the shape of epidemics away from peaks and toward plateaus, shoulders, and oscillations.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Joshua S Weitz , Sang Woo Park , Ceyhun Eksin , Jonathan Dushoff

Forward-looking serial intervals correctly link epidemic growth to reproduction numbers.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Sang Woo Park , Kaiyuan Sun , David Champredon , Michael Li , Benjamin M Bolker , David J D Earn , Joshua S Weitz , Bryan T Grenfell , Jonathan Dushoff

Testing and Isolation Efficacy: Insights from a Simple Epidemic Model.

Bulletin of mathematical biology

Avec: Ali Gharouni , Fred M Abdelmalek , David J D Earn , Jonathan Dushoff , Benjamin M Bolker

The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants.

Journal of the Royal Society, Interface

Avec: Sang Woo Park , Benjamin M Bolker , Sebastian Funk , C Jessica E Metcalf , Joshua S Weitz , Bryan T Grenfell , Jonathan Dushoff

The unmitigated profile of COVID-19 infectiousness.

eLife

Avec: Ron Sender , Yinon Bar-On , Sang Woo Park , Elad Noor , Jonathan Dushoff , Ron Milo

Inferring generation-interval distributions from contact-tracing data.

Journal of the Royal Society, Interface

Avec: Sang Woo Park , David Champredon , Jonathan Dushoff

Reconciling early-outbreak estimates of the basic reproductive number and its uncertainty: framework and applications to the novel coronavirus (SARS-CoV-2) outbreak.

Journal of the Royal Society, Interface

Avec: Sang Woo Park , Benjamin M Bolker , David Champredon , David J D Earn , Michael Li , Joshua S Weitz , Bryan T Grenfell , Jonathan Dushoff

The time scale of asymptomatic transmission affects estimates of epidemic potential in the COVID-19 outbreak.

medRxiv : the preprint server for health sciences

Avec: Sang Woo Park , Daniel M Cornforth , Jonathan Dushoff , Joshua S Weitz

Modifiable factors related to life-space mobility in community-dwelling older adults: results from the Canadian Longitudinal Study on Aging.

BMC geriatrics

Avec: A Kuspinar , C P Verschoor , M K Beauchamp , J Dushoff , J Ma , E Amster , C Bassim , V Dal Bello-Haas , M A Gregory , J E Harris , L Letts , S E Neil-Sztramko , J Richardson , R Valaitis , B Vrkljan

Age-dependence of healthcare interventions for COVID-19 in Ontario, Canada.

BMC public health

Avec: Irena Papst , Michael Li , David Champredon , Benjamin M Bolker , Jonathan Dushoff , David J D Earn

The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic.

Current biology : CB

Avec: Sarah P Otto , Troy Day , Julien Arino , Caroline Colijn , Jonathan Dushoff , Michael Li , Samir Mechai , Gary Van Domselaar , Jianhong Wu , David J D Earn , Nicholas H Ogden

Comparing machine learning approaches to incorporate time-varying covariates in predicting cancer survival time.

Scientific reports

Avec: Steve Cygu , Hsien Seow , Jonathan Dushoff , Benjamin M Bolker

The probability of epidemic burnout in the stochastic SIR model with vital dynamics.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Todd L Parsons , Benjamin M Bolker , Jonathan Dushoff , David J D Earn

Reducing spatial heterogeneity in coverage improves the effectiveness of dog vaccination against rabies.

bioRxiv : the preprint server for biology

Avec: Elaine A Ferguson , Ahmed Lugelo , Anna Czupryna , Danni Anderson , Felix Lankester , Lwitiko Sikana , Jonathan Dushoff , Katie Hampson

Intervention Serology and Interaction Substitution: Modeling the Role of 'Shield Immunity' in Reducing COVID-19 Epidemic Spread.

medRxiv : the preprint server for health sciences

Potential Role of Social Distancing in Mitigating Spread of Coronavirus Disease, South Korea.

Emerging infectious diseases

Avec: Sang Woo Park , Kaiyuan Sun , Cécile Viboud , Bryan T Grenfell , Jonathan Dushoff

The time scale of asymptomatic transmission affects estimates of epidemic potential in the COVID-19 outbreak.

Epidemics

Avec: Sang Woo Park , Daniel M Cornforth , Jonathan Dushoff , Joshua S Weitz

Traditional Male Circumcision is Associated with Sexual Risk Behaviors in Sub-Saharan Countries Prioritized for Male Circumcision.

AIDS and behavior

Avec: Chyun Shi , Michael Li , Jonathan Dushoff

Patterns of seasonal and pandemic influenza-associated health care and mortality in Ontario, Canada.

BMC public health

Avec: Michael Li , Benjamin M Bolker , Jonathan Dushoff , Junling Ma , David J D Earn

Speed and strength of an epidemic intervention.

Proceedings. Biological sciences

Avec: Jonathan Dushoff , Sang Woo Park

Acceleration of plague outbreaks in the second pandemic.

Proceedings of the National Academy of Sciences of the United States of America

Avec: David J D Earn , Junling Ma , Hendrik Poinar , Jonathan Dushoff , Benjamin M Bolker

From science to politics: COVID-19 information fatigue on YouTube.

BMC public health

Avec: Chyun-Fung Shi , Matthew C So , Sophie Stelmach , Arielle Earn , David J D Earn , Jonathan Dushoff

Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa.

Science (New York, N.Y.)

Avec: Juliet R C Pulliam , Cari van Schalkwyk , Nevashan Govender , Anne von Gottberg , Cheryl Cohen , Michelle J Groome , Jonathan Dushoff , Koleka Mlisana , Harry Moultrie

Does Counting Different Life Stages Impact Estimates for Extinction Probabilities for Tsetse (Glossina spp)?

Bulletin of mathematical biology

Avec: Elisha B Are , John W Hargrove , Jonathan Dushoff

Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities.

PNAS nexus

Avec: Sang Woo Park , Jonathan Dushoff , Bryan T Grenfell , Joshua S Weitz

Mathematical modelling for pandemic preparedness in Canada: Learning from COVID-19.

Canada communicable disease report = Releve des maladies transmissibles au Canada

Avec: Nicholas H Ogden , Emily S Acheson , Kevin Brown , David Champredon , Caroline Colijn , Alan Diener , Jonathan Dushoff , David Jd Earn , Vanessa Gabriele-Rivet , Marcellin Gangbè , Steve Guillouzic , Deirdre Hennessy , Valerie Hongoh , Amy Hurford , Lisa Kanary , Michael Li , Victoria Ng , Sarah P Otto , Irena Papst , Erin E Rees , Ashleigh Tuite , Matthew R MacLeod , Carmen Lia Murall , Lisa Waddell , Rania Wasfi , Michael Wolfson

Réseau de co-auteurs

Sang Woo Park 18 collaborations

Joshua S Weitz 13 collaborations

Benjamin M Bolker 9 collaborations

David J D Earn 9 collaborations

Michael Li 8 collaborations

Bryan T Grenfell 7 collaborations

David Champredon 6 collaborations

Kaiyuan Sun 4 collaborations

Caroline Colijn 3 collaborations

Nicholas H Ogden 3 collaborations

Sarah P Otto 3 collaborations

Sebastian Funk 3 collaborations

Guanlin Li 3 collaborations

David Jd Earn 2 collaborations

Gary Van Domselaar 2 collaborations

Sam Abbott 2 collaborations

Ron Sender 2 collaborations

Natalie M Linton 2 collaborations

Andrei R Akhmetzhanov 2 collaborations

Stephen J Beckett 2 collaborations

Ashley R Coenen 2 collaborations

David Demory 2 collaborations

Marian Dominguez-Mirazo 2 collaborations

Chung-Yin Leung 2 collaborations

Andreea Măgălie 2 collaborations

Rogelio Rodriguez-Gonzalez 2 collaborations

Shashwat Shivam 2 collaborations

Juliet R C Pulliam 2 collaborations

Cécile Viboud 2 collaborations

Daniel M Cornforth 2 collaborations

Irena Papst 2 collaborations

Junling Ma 2 collaborations

Natalie Knox 1 collaboration

Kristyn Franklin 1 collaboration

Gordon Jolly 1 collaboration

Yinon M Bar-On 1 collaboration

Jantien A Backer 1 collaboration

Jacco Wallinga 1 collaboration

Cecile Viboud 1 collaboration

Luis Ponce 1 collaboration

Wu Han Toh 1 collaboration

Hao-Yuan Cheng 1 collaboration

Robin N Thompson 1 collaboration

Conan Y Zhao 1 collaboration

C Marijn Hazelbag 1 collaboration

Emanuel M Dominic 1 collaboration

Zinhle E Mthombothi 1 collaboration

Wim Delva 1 collaboration

Michael H Cortez 1 collaboration

Jeremy D Harris 1 collaboration

Kelly Charniga 1 collaboration

Anne Cori 1 collaboration

Katelyn M Gostic 1 collaboration

Adrian Lison 1 collaboration

Christopher E Overton 1 collaboration

Thomas Ward 1 collaboration

Simon Cauchemez 1 collaboration

Michael Roswell 1 collaboration

Rachael Winfree 1 collaboration

Ceyhun Eksin 1 collaboration

Ali Gharouni 1 collaboration

Fred M Abdelmalek 1 collaboration

C Jessica E Metcalf 1 collaboration

Yinon Bar-On 1 collaboration

Elad Noor 1 collaboration

Ron Milo 1 collaboration

A Kuspinar 1 collaboration

C P Verschoor 1 collaboration

M K Beauchamp 1 collaboration

J Dushoff 1 collaboration

J Ma 1 collaboration

E Amster 1 collaboration

C Bassim 1 collaboration

V Dal Bello-Haas 1 collaboration

M A Gregory 1 collaboration

J E Harris 1 collaboration

L Letts 1 collaboration

S E Neil-Sztramko 1 collaboration

J Richardson 1 collaboration

R Valaitis 1 collaboration

B Vrkljan 1 collaboration

Troy Day 1 collaboration

Julien Arino 1 collaboration

Samir Mechai 1 collaboration

Jianhong Wu 1 collaboration

Steve Cygu 1 collaboration

Hsien Seow 1 collaboration

Todd L Parsons 1 collaboration

Elaine A Ferguson 1 collaboration

Ahmed Lugelo 1 collaboration

Anna Czupryna 1 collaboration

Danni Anderson 1 collaboration

Felix Lankester 1 collaboration

Lwitiko Sikana 1 collaboration

Katie Hampson 1 collaboration

Conan Zhao 1 collaboration

Chyun Shi 1 collaboration

Hendrik Poinar 1 collaboration

Chyun-Fung Shi 1 collaboration

Matthew C So 1 collaboration

Sophie Stelmach 1 collaboration

Arielle Earn 1 collaboration

Cari van Schalkwyk 1 collaboration

Nevashan Govender 1 collaboration

Anne von Gottberg 1 collaboration

Cheryl Cohen 1 collaboration

Michelle J Groome 1 collaboration

Koleka Mlisana 1 collaboration

Harry Moultrie 1 collaboration

Elisha B Are 1 collaboration

John W Hargrove 1 collaboration

Emily S Acheson 1 collaboration

Kevin Brown 1 collaboration

Alan Diener 1 collaboration

Vanessa Gabriele-Rivet 1 collaboration

Marcellin Gangbè 1 collaboration

Steve Guillouzic 1 collaboration

Deirdre Hennessy 1 collaboration

Valerie Hongoh 1 collaboration

Amy Hurford 1 collaboration

Lisa Kanary 1 collaboration

Victoria Ng 1 collaboration

Erin E Rees 1 collaboration

Ashleigh Tuite 1 collaboration

Matthew R MacLeod 1 collaboration

Carmen Lia Murall 1 collaboration

Lisa Waddell 1 collaboration

Rania Wasfi 1 collaboration

Michael Wolfson 1 collaboration