Mark Woolhouse

Affiliations

Usher Institute, University of Edinburgh, Edinburgh EH9 3FL, UK.

Publications (28)

No Exchange of Picornaviruses in Vietnam between Humans and Animals in a High-Risk Cohort with Close Contact despite High Prevalence and Diversity.

Viruses

Avec: Lu Lu , Jordan Ashworth , Dung Nguyen , Kejin Li , Donald B Smith , Mark Woolhouse , On Behalf Of The Vizions Consortium

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance.

Nature communications

Avec: Patrick Munk , Christian Brinch , Frederik Duus Møller , Thomas N Petersen , Rene S Hendriksen , Anne Mette Seyfarth , Jette S Kjeldgaard , Christina Aaby Svendsen , Bram van Bunnik , Fanny Berglund , Auteur inconnu , D G Joakim Larsson , Marion Koopmans , Mark Woolhouse , Frank M Aarestrup

Breaking the silence: A qualitative exploration of parental perspectives of children with Goldenhar Syndrome.

Heliyon

Avec: Rebecca Hitchen , Maxine Woolhouse , Patricia Holch

Early Pandemic Evaluation and Enhanced Surveillance of COVID-19 (EAVE II): protocol for an observational study using linked Scottish national data.

BMJ open

Avec: Colin R Simpson , Chris Robertson , Eleftheria Vasileiou , Jim McMenamin , Rory Gunson , Lewis D Ritchie , Mark Woolhouse , Lynn Morrice , Dave Kelly , Helen R Stagg , Diogo Marques , Josie Murray , Aziz Sheikh

Fungal allergic sensitisation in young rural Zimbabwean children: Gut mycobiome and seroreactivity characteristics.

Current research in microbial sciences

Avec: Lorraine Tsitsi Pfavayi , Elopy Nimele Sibanda , Stephen Baker , Mark Woolhouse , Takafira Mduluza , Francisca Mutapi

Real-time monitoring of COVID-19 in Scotland.

The journal of the Royal College of Physicians of Edinburgh

Avec: Giles Calder-Gerver , Stella Mazeri , Samuel Haynes , Camille Simonet , Mark Woolhouse , Helen Brown

What does equitable global health research and delivery look like? Tackling Infections to Benefit Africa (TIBA) partnership as a case study.

BMJ global health

Avec: Francisca Mutapi , Geoffrey Banda , Mark Woolhouse

Analysis of

Microbial genomics

Avec: Margo Chase-Topping , Timothy J Dallman , Lesley Allison , Nadejda Lupolova , Louise Matthews , Sonia Mitchell , Christopher J Banks , Jamie Prentice , Helen Brown , Sue Tongue , Madeleine Henry , Judith Evans , George Gunn , Deborah Hoyle , Tom N McNeilly , Stephen Fitzgerald , Alison Smith-Palmer , Sharif Shaaban , Anne Holmes , Mary Hanson , Mark Woolhouse , Xavier Didelot , Claire Jenkins , David L Gally

COVID-19 hospital admissions and deaths after BNT162b2 and ChAdOx1 nCoV-19 vaccinations in 2·57 million people in Scotland (EAVE II): a prospective cohort study.

The Lancet. Respiratory medicine

Avec: Utkarsh Agrawal , Srinivasa Vittal Katikireddi , Colin McCowan , Rachel H Mulholland , Amaya Azcoaga-Lorenzo , Sarah Amele , Adeniyi Francis Fagbamigbe , Eleftheria Vasileiou , Zoe Grange , Ting Shi , Steven Kerr , Emily Moore , Josephine L K Murray , Syed Ahmar Shah , Lewis Ritchie , Dermot O'Reilly , Sarah J Stock , Jillian Beggs , Antony Chuter , Fatemah Torabi , Ashley Akbari , Stuart Bedston , Jim McMenamin , Rachael Wood , Ruby S M Tang , Simon de Lusignan , F D Richard Hobbs , Mark Woolhouse , Colin R Simpson , Chris Robertson , Aziz Sheikh

First dose ChAdOx1 and BNT162b2 COVID-19 vaccinations and cerebral venous sinus thrombosis: A pooled self-controlled case series study of 11.6 million individuals in England, Scotland, and Wales.

PLoS medicine

Avec: Steven Kerr , Mark Joy , Fatemeh Torabi , Stuart Bedston , Ashley Akbari , Utkarsh Agrawal , Jillian Beggs , Declan Bradley , Antony Chuter , Annemarie B Docherty , David Ford , Richard Hobbs , Srinivasa Vittal Katikireddi , Emily Lowthian , Simon de Lusignan , Ronan Lyons , James Marple , Colin McCowan , Dylan McGagh , Jim McMenamin , Emily Moore , Josephine-L K Murray , Rhiannon K Owen , Jiafeng Pan , Lewis Ritchie , Syed Ahmar Shah , Ting Shi , Sarah Stock , Ruby S M Tsang , Eleftheria Vasileiou , Mark Woolhouse , Colin R Simpson , Chris Robertson , Aziz Sheikh

Influence of surface features on the perception of nonadjacent musical phrases.

Musicae scientiae : the journal of the European Society for the Cognitive Sciences of Music

Avec: Joanna Spyra , Matthew Woolhouse

Scottish Index of Multiple Deprivation (SIMD) indicators as predictors of mortality among patients hospitalised with COVID-19 disease in the Lothian Region, Scotland during the first wave: a cohort study.

International journal for equity in health

Avec: Marcello S Scopazzini , Roo Nicola Rose Cave , Callum P Mutch , Daniella A Ross , Anda Bularga , Margo Chase-Topping , Mark Woolhouse , Oliver Koch , Auteur inconnu , Meghan R Perry , Claire L Mackintosh

West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers.

PLoS pathogens

Avec: Lu Lu , Feifei Zhang , Bas B Oude Munnink , Emmanuelle Munger , Reina S Sikkema , Styliani Pappa , Katerina Tsioka , Alessandro Sinigaglia , Emanuela Dal Molin , Barbara B Shih , Anne Günther , Anne Pohlmann , Ute Ziegler , Martin Beer , Rachel A Taylor , Frederic Bartumeus , Mark Woolhouse , Frank M Aarestrup , Luisa Barzon , Anna Papa , Samantha Lycett , Marion P G Koopmans

Temporal Dynamics, Discovery, and Emergence of Human-Transmissible RNA Viruses.

Molecular biology and evolution

Avec: Lu Lu , Feifei Zhang , Liam Brierley , Gail Robertson , Margo Chase-Topping , Samantha Lycett , Mark Woolhouse

Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam.

Scientific data

Avec: Mark Woolhouse , Jordan Ashworth , Carlijn Bogaardt , Ngo Tri Tue , Steve Baker , Guy Thwaites , Tran My Phuc

A cross-sectional survey of practices and knowledge among antibiotic retailers in Nairobi, Kenya.

Journal of global health

Avec: Dishon Muloi , Eric M Fèvre , Judy Bettridge , Robert Rono , Daniel Ong'are , James M Hassell , Maurice K Karani , Patrick Muinde , Bram van Bunnik , Alice Street , Margo Chase-Topping , Amy B Pedersen , Melissa J Ward , Mark Woolhouse

Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Samantha J Lycett , Anne Pohlmann , Christoph Staubach , Valentina Caliendo , Mark Woolhouse , Martin Beer , Thijs Kuiken , Auteur inconnu

Epidemiology and Phylogenetic Analysis of Viral Respiratory Infections in Vietnam.

Frontiers in microbiology

Avec: Lu Lu , Gail Robertson , Jordan Ashworth , Anh Pham Hong , Ting Shi , Alasdair Ivens , Guy Thwaites , Stephen Baker , Mark Woolhouse

Pig Exposure and Health Outcomes in Hospitalized Infectious Disease Patients in Vietnam.

EcoHealth

Avec: Gail Robertson , Meghan Perry , Phat Voong Vinh , Dung Tran Thi Ngoc , Tam Pham Thi Thanh , Phuc Tran My , Huong Dang Thao , Maia Rabaa , Stephen Baker , Mark Woolhouse , Auteur inconnu

The Identification and Characterization of Immunoreactive Fungal Proteins Recognized by Sera from Zimbabweans Sensitized to Fungi.

International archives of allergy and immunology

Avec: Lorraine Tsitsi Pfavayi , Richard Burchmore , Elopy Nimele Sibanda , Stephen Baker , Mark Woolhouse , Takafira Mduluza , Francisca Mutapi

Severity of omicron variant of concern and effectiveness of vaccine boosters against symptomatic disease in Scotland (EAVE II): a national cohort study with nested test-negative design.

The Lancet. Infectious diseases

Avec: Aziz Sheikh , Steven Kerr , Mark Woolhouse , Jim McMenamin , Chris Robertson , Auteur inconnu

Paediatric schistosomiasis: last mile preparations for deploying paediatric praziquantel.

Trends in parasitology

Avec: Francisca Mutapi , Amadou Garba , Mark Woolhouse , Paul Kazyoba

Interim findings from first-dose mass COVID-19 vaccination roll-out and COVID-19 hospital admissions in Scotland: a national prospective cohort study.

Lancet (London, England)

Avec: Eleftheria Vasileiou , Colin R Simpson , Ting Shi , Steven Kerr , Utkarsh Agrawal , Ashley Akbari , Stuart Bedston , Jillian Beggs , Declan Bradley , Antony Chuter , Simon de Lusignan , Annemarie B Docherty , David Ford , Fd Richard Hobbs , Mark Joy , Srinivasa Vittal Katikireddi , James Marple , Colin McCowan , Dylan McGagh , Jim McMenamin , Emily Moore , Josephine Lk Murray , Jiafeng Pan , Lewis Ritchie , Syed Ahmar Shah , Sarah Stock , Fatemeh Torabi , Ruby Sm Tsang , Rachael Wood , Mark Woolhouse , Chris Robertson , Aziz Sheikh

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.

Nature communications

Avec: Rene S Hendriksen , Patrick Munk , Patrick Njage , Bram van Bunnik , Luke McNally , Oksana Lukjancenko , Timo Röder , David Nieuwenhuijse , Susanne Karlsmose Pedersen , Jette Kjeldgaard , Rolf S Kaas , Philip Thomas Lanken Conradsen Clausen , Josef Korbinian Vogt , Pimlapas Leekitcharoenphon , Milou G M van de Schans , Tina Zuidema , Ana Maria de Roda Husman , Simon Rasmussen , Bent Petersen , Auteur inconnu , Clara Amid , Guy Cochrane , Thomas Sicheritz-Ponten , Heike Schmitt , Jorge Raul Matheu Alvarez , Awa Aidara-Kane , Sünje J Pamp , Ole Lund , Tine Hald , Mark Woolhouse , Marion P Koopmans , Håkan Vigre , Thomas Nordahl Petersen , Frank M Aarestrup

Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands.

Nature communications

Avec: Lu Lu , Reina S Sikkema , Francisca C Velkers , David F Nieuwenhuijse , Egil A J Fischer , Paola A Meijer , Noortje Bouwmeester-Vincken , Ariene Rietveld , Marjolijn C A Wegdam-Blans , Paulien Tolsma , Marco Koppelman , Lidwien A M Smit , Renate W Hakze-van der Honing , Wim H M van der Poel , Arco N van der Spek , Marcel A H Spierenburg , Robert Jan Molenaar , Jan de Rond , Marieke Augustijn , Mark Woolhouse , J Arjan Stegeman , Samantha Lycett , Bas B Oude Munnink , Marion P G Koopmans

Association between multimorbidity and mortality in a cohort of patients admitted to hospital with COVID-19 in Scotland.

Journal of the Royal Society of Medicine

Avec: Utkarsh Agrawal , Amaya Azcoaga-Lorenzo , Adeniyi Francis Fagbamigbe , Eleftheria Vasileiou , Paul Henery , Colin R Simpson , Sarah J Stock , Syed Ahmar Shah , Chris Robertson , Mark Woolhouse , Lewis D Ritchie , Aziz Shiekh , Ewen M Harrison , Annemarie B Docherty , Colin McCowan

Impact on emergency and elective hospital-based care in Scotland over the first 12 months of the pandemic: interrupted time-series analysis of national lockdowns.

Journal of the Royal Society of Medicine

Avec: Syed Ahmar Shah , Rachel H Mulholland , Samantha Wilkinson , Srinivasa Vittal Katikireddi , Jiafeng Pan , Ting Shi , Steven Kerr , Uktarsh Agrawal , Igor Rudan , Colin R Simpson , Sarah J Stock , John Macleod , Josephine-Lk Murray , Colin McCowan , Lewis Ritchie , Mark Woolhouse , Aziz Sheikh

Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin.

Microbiology resource announcements

Avec: Samuel M Njoroge , Laure F Madé , Astrid von Mentzer , Benard W Kulohoma , Timothy K Kamanu , Tom T Ouko , John Kiiru , Melissa J Ward , Nicholas R Thomson , Eric M Fèvre , Mark Woolhouse , Samuel Kariuki

Réseau de co-auteurs

None None 6 collaborations

Colin R Simpson 6 collaborations

Chris Robertson 6 collaborations

Aziz Sheikh 6 collaborations

Lu Lu 5 collaborations

Eleftheria Vasileiou 5 collaborations

Jim McMenamin 5 collaborations

Colin McCowan 5 collaborations

Ting Shi 5 collaborations

Steven Kerr 5 collaborations

Syed Ahmar Shah 5 collaborations

Stephen Baker 4 collaborations

Francisca Mutapi 4 collaborations

Margo Chase-Topping 4 collaborations

Utkarsh Agrawal 4 collaborations

Srinivasa Vittal Katikireddi 4 collaborations

Lewis Ritchie 4 collaborations

Jordan Ashworth 3 collaborations

Bram van Bunnik 3 collaborations

Frank M Aarestrup 3 collaborations

Emily Moore 3 collaborations

Sarah J Stock 3 collaborations

Jillian Beggs 3 collaborations

Antony Chuter 3 collaborations

Ashley Akbari 3 collaborations

Stuart Bedston 3 collaborations

Simon de Lusignan 3 collaborations

Annemarie B Docherty 3 collaborations

Jiafeng Pan 3 collaborations

Samantha Lycett 3 collaborations

Gail Robertson 3 collaborations

Patrick Munk 2 collaborations

Rene S Hendriksen 2 collaborations

Lewis D Ritchie 2 collaborations

Lorraine Tsitsi Pfavayi 2 collaborations

Elopy Nimele Sibanda 2 collaborations

Takafira Mduluza 2 collaborations

Helen Brown 2 collaborations

Rachel H Mulholland 2 collaborations

Amaya Azcoaga-Lorenzo 2 collaborations

Adeniyi Francis Fagbamigbe 2 collaborations

Rachael Wood 2 collaborations

Mark Joy 2 collaborations

Fatemeh Torabi 2 collaborations

Declan Bradley 2 collaborations

David Ford 2 collaborations

James Marple 2 collaborations

Dylan McGagh 2 collaborations

Sarah Stock 2 collaborations

Feifei Zhang 2 collaborations

Bas B Oude Munnink 2 collaborations

Reina S Sikkema 2 collaborations

Anne Pohlmann 2 collaborations

Martin Beer 2 collaborations

Marion P G Koopmans 2 collaborations

Guy Thwaites 2 collaborations

Eric M Fèvre 2 collaborations

Melissa J Ward 2 collaborations

Dung Nguyen 1 collaboration

Kejin Li 1 collaboration

Donald B Smith 1 collaboration

None On Behalf Of The Vizions Consortium 1 collaboration

Christian Brinch 1 collaboration

Frederik Duus Møller 1 collaboration

Thomas N Petersen 1 collaboration

Anne Mette Seyfarth 1 collaboration

Jette S Kjeldgaard 1 collaboration

Christina Aaby Svendsen 1 collaboration

Fanny Berglund 1 collaboration

D G Joakim Larsson 1 collaboration

Marion Koopmans 1 collaboration

Rebecca Hitchen 1 collaboration

Maxine Woolhouse 1 collaboration

Patricia Holch 1 collaboration

Rory Gunson 1 collaboration

Lynn Morrice 1 collaboration

Dave Kelly 1 collaboration

Helen R Stagg 1 collaboration

Diogo Marques 1 collaboration

Josie Murray 1 collaboration

Giles Calder-Gerver 1 collaboration

Stella Mazeri 1 collaboration

Samuel Haynes 1 collaboration

Camille Simonet 1 collaboration

Geoffrey Banda 1 collaboration

Timothy J Dallman 1 collaboration

Lesley Allison 1 collaboration

Nadejda Lupolova 1 collaboration

Louise Matthews 1 collaboration

Sonia Mitchell 1 collaboration

Christopher J Banks 1 collaboration

Jamie Prentice 1 collaboration

Sue Tongue 1 collaboration

Madeleine Henry 1 collaboration

Judith Evans 1 collaboration

George Gunn 1 collaboration

Deborah Hoyle 1 collaboration

Tom N McNeilly 1 collaboration

Stephen Fitzgerald 1 collaboration

Alison Smith-Palmer 1 collaboration

Sharif Shaaban 1 collaboration

Anne Holmes 1 collaboration

Mary Hanson 1 collaboration

Xavier Didelot 1 collaboration

Claire Jenkins 1 collaboration

David L Gally 1 collaboration

Sarah Amele 1 collaboration

Zoe Grange 1 collaboration

Josephine L K Murray 1 collaboration

Dermot O'Reilly 1 collaboration

Fatemah Torabi 1 collaboration

Ruby S M Tang 1 collaboration

F D Richard Hobbs 1 collaboration

Richard Hobbs 1 collaboration

Emily Lowthian 1 collaboration

Ronan Lyons 1 collaboration

Josephine-L K Murray 1 collaboration

Rhiannon K Owen 1 collaboration

Ruby S M Tsang 1 collaboration

Joanna Spyra 1 collaboration

Matthew Woolhouse 1 collaboration

Marcello S Scopazzini 1 collaboration

Roo Nicola Rose Cave 1 collaboration

Callum P Mutch 1 collaboration

Daniella A Ross 1 collaboration

Anda Bularga 1 collaboration

Oliver Koch 1 collaboration

Meghan R Perry 1 collaboration

Claire L Mackintosh 1 collaboration

Emmanuelle Munger 1 collaboration

Styliani Pappa 1 collaboration

Katerina Tsioka 1 collaboration

Alessandro Sinigaglia 1 collaboration

Emanuela Dal Molin 1 collaboration

Barbara B Shih 1 collaboration

Anne Günther 1 collaboration

Ute Ziegler 1 collaboration

Rachel A Taylor 1 collaboration

Frederic Bartumeus 1 collaboration

Luisa Barzon 1 collaboration

Anna Papa 1 collaboration

Liam Brierley 1 collaboration

Carlijn Bogaardt 1 collaboration

Ngo Tri Tue 1 collaboration

Steve Baker 1 collaboration

Tran My Phuc 1 collaboration

Dishon Muloi 1 collaboration

Judy Bettridge 1 collaboration

Robert Rono 1 collaboration

Daniel Ong'are 1 collaboration

James M Hassell 1 collaboration

Maurice K Karani 1 collaboration

Patrick Muinde 1 collaboration

Alice Street 1 collaboration

Amy B Pedersen 1 collaboration

Samantha J Lycett 1 collaboration

Christoph Staubach 1 collaboration

Valentina Caliendo 1 collaboration

Thijs Kuiken 1 collaboration

Anh Pham Hong 1 collaboration

Alasdair Ivens 1 collaboration

Meghan Perry 1 collaboration

Phat Voong Vinh 1 collaboration

Dung Tran Thi Ngoc 1 collaboration

Tam Pham Thi Thanh 1 collaboration

Phuc Tran My 1 collaboration

Huong Dang Thao 1 collaboration

Maia Rabaa 1 collaboration

Richard Burchmore 1 collaboration

Amadou Garba 1 collaboration

Paul Kazyoba 1 collaboration

Fd Richard Hobbs 1 collaboration

Josephine Lk Murray 1 collaboration

Ruby Sm Tsang 1 collaboration

Patrick Njage 1 collaboration

Luke McNally 1 collaboration

Oksana Lukjancenko 1 collaboration

Timo Röder 1 collaboration

David Nieuwenhuijse 1 collaboration

Susanne Karlsmose Pedersen 1 collaboration

Jette Kjeldgaard 1 collaboration

Rolf S Kaas 1 collaboration

Philip Thomas Lanken Conradsen Clausen 1 collaboration

Josef Korbinian Vogt 1 collaboration

Pimlapas Leekitcharoenphon 1 collaboration

Milou G M van de Schans 1 collaboration

Tina Zuidema 1 collaboration

Ana Maria de Roda Husman 1 collaboration

Simon Rasmussen 1 collaboration

Bent Petersen 1 collaboration

Clara Amid 1 collaboration

Guy Cochrane 1 collaboration

Thomas Sicheritz-Ponten 1 collaboration

Heike Schmitt 1 collaboration

Jorge Raul Matheu Alvarez 1 collaboration

Awa Aidara-Kane 1 collaboration

Sünje J Pamp 1 collaboration

Ole Lund 1 collaboration

Tine Hald 1 collaboration

Marion P Koopmans 1 collaboration

Håkan Vigre 1 collaboration

Thomas Nordahl Petersen 1 collaboration

Francisca C Velkers 1 collaboration

David F Nieuwenhuijse 1 collaboration

Egil A J Fischer 1 collaboration

Paola A Meijer 1 collaboration

Noortje Bouwmeester-Vincken 1 collaboration

Ariene Rietveld 1 collaboration

Marjolijn C A Wegdam-Blans 1 collaboration

Paulien Tolsma 1 collaboration

Marco Koppelman 1 collaboration

Lidwien A M Smit 1 collaboration

Renate W Hakze-van der Honing 1 collaboration

Wim H M van der Poel 1 collaboration

Arco N van der Spek 1 collaboration

Marcel A H Spierenburg 1 collaboration

Robert Jan Molenaar 1 collaboration

Jan de Rond 1 collaboration

Marieke Augustijn 1 collaboration

J Arjan Stegeman 1 collaboration

Paul Henery 1 collaboration

Aziz Shiekh 1 collaboration

Ewen M Harrison 1 collaboration

Samantha Wilkinson 1 collaboration

Uktarsh Agrawal 1 collaboration

Igor Rudan 1 collaboration

John Macleod 1 collaboration

Josephine-Lk Murray 1 collaboration

Samuel M Njoroge 1 collaboration

Laure F Madé 1 collaboration

Astrid von Mentzer 1 collaboration

Benard W Kulohoma 1 collaboration

Timothy K Kamanu 1 collaboration

Tom T Ouko 1 collaboration

John Kiiru 1 collaboration

Nicholas R Thomson 1 collaboration

Samuel Kariuki 1 collaboration