Kévin Contrepois

Affiliations

Stanford University School of Medicine, Palo Alto, CA, USA.

Publications (56)

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.

Science (New York, N.Y.)

Avec: Francine E Garrett-Bakelman , Manjula Darshi , Stefan J Green , Ruben C Gur , Ling Lin , Brandon R Macias , Miles J McKenna , Cem Meydan , Tejaswini Mishra , Jad Nasrini , Brian D Piening , Lindsay F Rizzardi , Kumar Sharma , Jamila H Siamwala , Lynn Taylor , Martha Hotz Vitaterna , Maryam Afkarian , Ebrahim Afshinnekoo , Sara Ahadi , Aditya Ambati , Maneesh Arya , Daniela Bezdan , Colin M Callahan , Songjie Chen , Augustine M K Choi , George E Chlipala , Kévin Contrepois , Marisa Covington , Brian E Crucian , Immaculata De Vivo , David F Dinges , Douglas J Ebert , Jason I Feinberg , Jorge A Gandara , Kerry A George , John Goutsias , George S Grills , Alan R Hargens , Martina Heer , Ryan P Hillary , Andrew N Hoofnagle , Vivian Y H Hook , Garrett Jenkinson , Peng Jiang , Ali Keshavarzian , Steven S Laurie , Brittany Lee-McMullen , Sarah B Lumpkins , Matthew MacKay , Mark G Maienschein-Cline , Ari M Melnick , Tyler M Moore , Kiichi Nakahira , Hemal H Patel , Robert Pietrzyk , Varsha Rao , Rintaro Saito , Denis N Salins , Jan M Schilling , Dorothy D Sears , Caroline K Sheridan , Michael B Stenger , Rakel Tryggvadottir , Alexander E Urban , Tomas Vaisar , Benjamin Van Espen , Jing Zhang , Michael G Ziegler , Sara R Zwart , John B Charles , Craig E Kundrot , Graham B I Scott , Susan M Bailey , Mathias Basner , Andrew P Feinberg , Stuart M C Lee , Christopher E Mason , Emmanuel Mignot , Brinda K Rana , Scott M Smith , Michael P Snyder , Fred W Turek

Macrophage de novo NAD

Nature immunology

Avec: Paras S Minhas , Ling Liu , Peter K Moon , Amit U Joshi , Christopher Dove , Siddhita Mhatre , Kevin Contrepois , Qian Wang , Brittany A Lee , Michael Coronado , Daniel Bernstein , Michael P Snyder , Marie Migaud , Ravindra Majeti , Daria Mochly-Rosen , Joshua D Rabinowitz , Katrin I Andreasson

Systematic Identification of Regulators of Oxidative Stress Reveals Non-canonical Roles for Peroxisomal Import and the Pentose Phosphate Pathway.

Cell reports

Avec: Michael M Dubreuil , David W Morgens , Kanji Okumoto , Masanori Honsho , Kévin Contrepois , Brittany Lee-McMullen , Gavin McAllister Traber , Ria S Sood , Scott J Dixon , Michael P Snyder , Yukio Fujiki , Michael C Bassik

The Right Heart Network and Risk Stratification in Pulmonary Arterial Hypertension.

Chest

Avec: Francois Haddad , Kevin Contrepois , Myriam Amsallem , Andre Y Denault , Roberto J Bernardo , Alokkumar Jha , Shalina Taylor , Jennifer Arthur Ataam , Olaf Mercier , Tatiana Kuznetsova , Anton Vonk Noordegraaf , Roham T Zamanian , Andrew J Sweatt

Multiomics Characterization of Preterm Birth in Low- and Middle-Income Countries.

JAMA network open

Avec: Fyezah Jehan , Sunil Sazawal , Abdullah H Baqui , Muhammad Imran Nisar , Usha Dhingra , Rasheda Khanam , Muhammad Ilyas , Arup Dutta , Dipak K Mitra , Usma Mehmood , Saikat Deb , Arif Mahmud , Aneeta Hotwani , Said Mohammed Ali , Sayedur Rahman , Ambreen Nizar , Shaali Makame Ame , Mamun Ibne Moin , Sajid Muhammad , Aishwarya Chauhan , Nazma Begum , Waqasuddin Khan , Sayan Das , Salahuddin Ahmed , Tarik Hasan , Javairia Khalid , Syed Jafar Raza Rizvi , Mohammed Hamad Juma , Nabidul Haque Chowdhury , Furqan Kabir , Fahad Aftab , Abdul Quaiyum , Alexander Manu , Sachiyo Yoshida , Rajiv Bahl , Anisur Rahman , Jesmin Pervin , Jennifer Winston , Patrick Musonda , Jeffrey S A Stringer , James A Litch , Mohammad Sajjad Ghaemi , Mira N Moufarrej , Kévin Contrepois , Songjie Chen , Ina A Stelzer , Natalie Stanley , Alan L Chang , Ghaith Bany Hammad , Ronald J Wong , Candace Liu , Cecele C Quaintance , Anthony Culos , Camilo Espinosa , Maria Xenochristou , Martin Becker , Ramin Fallahzadeh , Edward Ganio , Amy S Tsai , Dyani Gaudilliere , Eileen S Tsai , Xiaoyuan Han , Kazuo Ando , Martha Tingle , Ivana Maric , Paul H Wise , Virginia D Winn , Maurice L Druzin , Ronald S Gibbs , Gary L Darmstadt , Jeffrey C Murray , Gary M Shaw , David K Stevenson , Michael P Snyder , Stephen R Quake , Martin S Angst , Brice Gaudilliere , Nima Aghaeepour , Auteur inconnu

Plasma Metabolites in Early Sepsis Identify Distinct Clusters Defined by Plasma Lipids.

Critical care explorations

Avec: Angela J Rogers , Aleksandra Leligdowicz , Kévin Contrepois , Alejandra Jauregui , Kathryn Vessel , Thomas J Deiss , Annika Belzer , Tom Liu , Matthew Lippi , Serena Ke , Erin Ross , Hanjing Zhou , Carolyn Hendrickson , Antonio Gomez , Pratik Sinha , Kirsten N Kangelaris , Kathleen D Liu , Carolyn S Calfee , Michael A Matthay

Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans.

Cell host & microbe

Avec: Samuel M Lancaster , Brittany Lee-McMullen , Charles Wilbur Abbott , Jeniffer V Quijada , Daniel Hornburg , Heyjun Park , Dalia Perelman , Dylan J Peterson , Michael Tang , Aaron Robinson , Sara Ahadi , Kévin Contrepois , Chia-Jui Hung , Melanie Ashland , Tracey McLaughlin , Anna Boonyanit , Aaron Horning , Justin L Sonnenburg , Michael P Snyder

Plasma metabolic profiling implicates dysregulated lipid metabolism and glycolytic shift in hyperinflammatory ARDS.

American journal of physiology. Lung cellular and molecular physiology

Avec: Narges Alipanah-Lechner , Lucile Neyton , Eran Mick , Andrew Willmore , Aleksandra Leligdowicz , Kévin Contrepois , Alejandra Jauregui , Hanjing Zhuo , Carolyn Hendrickson , Antonio Gomez , Pratik Sinha , Kirsten N Kangelaris , Kathleen D Liu , Michael A Matthay , Angela J Rogers , Carolyn S Calfee

Robust and High-Throughput Analytical Flow Proteomics Analysis of Cynomolgus Monkey and Human Matrices With Zeno SWATH Data-Independent Acquisition.

Molecular & cellular proteomics : MCP

Avec: Weiwen Sun , Yuan Lin , Yue Huang , Josolyn Chan , Sonia Terrillon , Anton I Rosenbaum , Kévin Contrepois

The MEK5-ERK5 Kinase Axis Controls Lipid Metabolism in Small-Cell Lung Cancer.

Cancer research

Avec: Sandra Cristea , Garry L Coles , Daniel Hornburg , Maya Gershkovitz , Julia Arand , Siqi Cao , Triparna Sen , Stuart C Williamson , Jun W Kim , Alexandros P Drainas , Andrew He , Laurent Le Cam , Lauren Averett Byers , Michael P Snyder , Kévin Contrepois , Julien Sage

ALDH1A3 Coordinates Metabolism With Gene Regulation in Pulmonary Arterial Hypertension.

Circulation

Avec: Dan Li , Ning-Yi Shao , Jan-Renier Moonen , Zhixin Zhao , Minyi Shi , Shoichiro Otsuki , Lingli Wang , Tiffany Nguyen , Elaine Yan , David P Marciano , Kévin Contrepois , Caiyun G Li , Joseph C Wu , Michael P Snyder , Marlene Rabinovitch

metID: an R package for automatable compound annotation for LC-MS-based data.

Bioinformatics (Oxford, England)

Avec: Xiaotao Shen , Si Wu , Liang Liang , Songjie Chen , Kévin Contrepois , Zheng-Jiang Zhu , Michael Snyder

Cross-Platform Evaluation of Commercially Targeted and Untargeted Metabolomics Approaches to Optimize the Investigation of Psychiatric Disease.

Metabolites

Avec: Lauren E Chaby , Heather C Lasseter , Kévin Contrepois , Reza M Salek , Christoph W Turck , Andrew Thompson , Timothy Vaughan , Magali Haas , Andreas Jeromin

H2B Type 1-K Accumulates in Senescent Fibroblasts with Persistent DNA Damage along with Methylated and Phosphorylated Forms of HMGA1.

Proteomes

Avec: Kévin Contrepois , Carl Mann , François Fenaille

A systems approach points to a therapeutic role for retinoids in asparaginase-associated pancreatitis.

Science translational medicine

Avec: Cheng-Yu Tsai , Toshie Saito , Mayur Sarangdhar , Maisam Abu-El-Haija , Li Wen , Bomi Lee , Mang Yu , Den A Lipata , Murli Manohar , Monique T Barakat , Kévin Contrepois , Thai Hoa Tran , Yves Theoret , Na Bo , Ying Ding , Kristen Stevenson , Elena J Ladas , Lewis B Silverman , Loredana Quadro , Tracy G Anthony , Anil G Jegga , Sohail Z Husain

Early prediction and longitudinal modeling of preeclampsia from multiomics.

Patterns (New York, N.Y.)

Avec: Ivana Marić , Kévin Contrepois , Mira N Moufarrej , Ina A Stelzer , Dorien Feyaerts , Xiaoyuan Han , Andy Tang , Natalie Stanley , Ronald J Wong , Gavin M Traber , Mathew Ellenberger , Alan L Chang , Ramin Fallahzadeh , Huda Nassar , Martin Becker , Maria Xenochristou , Camilo Espinosa , Davide De Francesco , Mohammad S Ghaemi , Elizabeth K Costello , Anthony Culos , Xuefeng B Ling , Karl G Sylvester , Gary L Darmstadt , Virginia D Winn , Gary M Shaw , David A Relman , Stephen R Quake , Martin S Angst , Michael P Snyder , David K Stevenson , Brice Gaudilliere , Nima Aghaeepour

Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries.

Science advances

Avec: Camilo A Espinosa , Waqasuddin Khan , Rasheda Khanam , Sayan Das , Javairia Khalid , Jesmin Pervin , Margaret P Kasaro , Kévin Contrepois , Alan L Chang , Thanaphong Phongpreecha , Basil Michael , Mathew Ellenberger , Usma Mehmood , Aneeta Hotwani , Ambreen Nizar , Furqan Kabir , Ronald J Wong , Martin Becker , Eloise Berson , Anthony Culos , Davide De Francesco , Samson Mataraso , Neal Ravindra , Melan Thuraiappah , Maria Xenochristou , Ina A Stelzer , Ivana Marić , Arup Dutta , Rubhana Raqib , Salahuddin Ahmed , Sayedur Rahman , A S M Tarik Hasan , Said M Ali , Mohamed H Juma , Monjur Rahman , Shaki Aktar , Saikat Deb , Joan T Price , Paul H Wise , Virginia D Winn , Maurice L Druzin , Ronald S Gibbs , Gary L Darmstadt , Jeffrey C Murray , Jeffrey S A Stringer , Brice Gaudilliere , Michael P Snyder , Martin S Angst , Anisur Rahman , Abdullah H Baqui , Fyezah Jehan , Muhammad Imran Nisar , Bellington Vwalika , Sunil Sazawal , Gary M Shaw , David K Stevenson , Nima Aghaeepour

Achieving Inclusive Healthcare through Integrating Education and Research with AI and Personalized Curricula.

medRxiv : the preprint server for health sciences

Avec: Amir Bahmani , Kexin Cha , Arash Alavi , Amit Dixit , Antony Ross , Ryan Park , Francesca Goncalves , Shirley Ma , Paul Saxman , Ramesh Nair , Ramin Akhavan-Sarraf , Xin Zhou , Meng Wang , Kévin Contrepois , Jennifer Li Pook Than , Emma Monte , David Jose Florez Rodriguez , Jaslene Lai , Mohan Babu , Abtin Tondar , Sophia Miryam Schüssler-Fiorenza Rose , Ilya Akbari , Xinyue Zhang , Kritika Yegnashankaran , Joseph Yracheta , Kali Dale , Alison Derbenwick Miller , Scott Edmiston , Eva M McGhee , Camille Nebeker , Joseph C Wu , Anshul Kundaje , Michael Snyder

GLUT1 overexpression in CAR-T cells induces metabolic reprogramming and enhances potency.

Nature communications

Avec: Justin A Guerrero , Dorota D Klysz , Yiyun Chen , Meena Malipatlolla , Jameel Lone , Carley Fowler , Lucille Stuani , Audre May , Malek Bashti , Peng Xu , Jing Huang , Basil Michael , Kévin Contrepois , Shaurya Dhingra , Chris Fisher , Katrin J Svensson , Kara L Davis , Maya Kasowski , Steven A Feldman , Elena Sotillo , Crystal L Mackall

Physiological blood-brain transport is impaired with age by a shift in transcytosis.

Nature

Avec: Andrew C Yang , Marc Y Stevens , Michelle B Chen , Davis P Lee , Daniel Stähli , David Gate , Kévin Contrepois , Winnie Chen , Tal Iram , Lichao Zhang , Ryan T Vest , Aisling Chaney , Benoit Lehallier , Niclas Olsson , Haley du Bois , Ryan Hsieh , Haley C Cropper , Daniela Berdnik , Lulin Li , Elizabeth Y Wang , Gavin M Traber , Carolyn R Bertozzi , Jian Luo , Michael P Snyder , Joshua E Elias , Stephen R Quake , Michelle L James , Tony Wyss-Coray

Global metabolic profiling to model biological processes of aging in twins.

Aging cell

Avec: Bryan J Bunning , Kévin Contrepois , Brittany Lee-McMullen , Gopal Krishna R Dhondalay , Wenming Zhang , Dana Tupa , Olivia Raeber , Manisha Desai , Kari C Nadeau , Michael P Snyder , Sandra Andorf

Multiomic immune clockworks of pregnancy.

Seminars in immunopathology

Avec: Laura S Peterson , Ina A Stelzer , Amy S Tsai , Mohammad S Ghaemi , Xiaoyuan Han , Kazuo Ando , Virginia D Winn , Nadine R Martinez , Kevin Contrepois , Mira N Moufarrej , Stephen Quake , David A Relman , Michael P Snyder , Gary M Shaw , David K Stevenson , Ronald J Wong , Petra Arck , Martin S Angst , Nima Aghaeepour , Brice Gaudilliere

A longitudinal big data approach for precision health.

Nature medicine

Avec: Sophia Miryam Schüssler-Fiorenza Rose , Kévin Contrepois , Kegan J Moneghetti , Wenyu Zhou , Tejaswini Mishra , Samson Mataraso , Orit Dagan-Rosenfeld , Ariel B Ganz , Jessilyn Dunn , Daniel Hornburg , Shannon Rego , Dalia Perelman , Sara Ahadi , M Reza Sailani , Yanjiao Zhou , Shana R Leopold , Jieming Chen , Melanie Ashland , Jeffrey W Christle , Monika Avina , Patricia Limcaoco , Camilo Ruiz , Marilyn Tan , Atul J Butte , George M Weinstock , George M Slavich , Erica Sodergren , Tracey L McLaughlin , Francois Haddad , Michael P Snyder

Exercise plasma boosts memory and dampens brain inflammation via clusterin.

Nature

Avec: Zurine De Miguel , Nathalie Khoury , Michael J Betley , Benoit Lehallier , Drew Willoughby , Niclas Olsson , Andrew C Yang , Oliver Hahn , Nannan Lu , Ryan T Vest , Liana N Bonanno , Lakshmi Yerra , Lichao Zhang , Nay Lui Saw , J Kaci Fairchild , Davis Lee , Hui Zhang , Patrick L McAlpine , Kévin Contrepois , Mehrdad Shamloo , Joshua E Elias , Thomas A Rando , Tony Wyss-Coray

Peripheral Oxygen Extraction and Exercise Limitation in Asymptomatic Patients with Diabetes Mellitus.

The American journal of cardiology

Avec: Yukari Kobayashi , Jeffrey W Christle , Kévin Contrepois , Tomoko Nishi , Kegan Moneghetti , Nicholas Cauwenberghs , Jonathan Myers , Tatiana Kuznetsova , Latha Palaniappan , Francois Haddad

Impact of acute lymphoblastic leukemia induction therapy: findings from metabolomics on non-fasted plasma samples from a biorepository.

Metabolomics : Official journal of the Metabolomic Society

Avec: Toshie Saito , Yue Wei , Li Wen , Chaitanya Srinivasan , Benjamin O Wolthers , Cheng-Yu Tsai , Marian H Harris , Kristen Stevenson , Craig Byersdorfer , Judy-April Oparaji , Christian Fernandez , Amitava Mukherjee , Maisam Abu-El-Haija , Sameer Agnihotri , Kjeld Schmiegelow , Megan R Showalter , Paul W Fogle , Scott McCulloch , Kevin Contrepois , Lewis B Silverman , Ying Ding , Sohail Z Husain

Multi-omic profiling of primary mouse neutrophils predicts a pattern of sex and age-related functional regulation.

Nature aging

Avec: Ryan J Lu , Shalina Taylor , Kévin Contrepois , Minhoo Kim , Juan I Bravo , Mathew Ellenberger , Nirmal K Sampathkumar , Bérénice A Benayoun

Evolution of diapause in the African turquoise killifish by remodeling the ancient gene regulatory landscape.

Cell

Avec: Param Priya Singh , G Adam Reeves , Kévin Contrepois , Katharina Papsdorf , Jason W Miklas , Mathew Ellenberger , Chi-Kuo Hu , Michael P Snyder , Anne Brunet

Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset.

Science translational medicine

Avec: Ina A Stelzer , Mohammad S Ghaemi , Xiaoyuan Han , Kazuo Ando , Julien J Hédou , Dorien Feyaerts , Laura S Peterson , Kristen K Rumer , Eileen S Tsai , Edward A Ganio , Dyani K Gaudillière , Amy S Tsai , Benjamin Choisy , Lea P Gaigne , Franck Verdonk , Danielle Jacobsen , Sonia Gavasso , Gavin M Traber , Mathew Ellenberger , Natalie Stanley , Martin Becker , Anthony Culos , Ramin Fallahzadeh , Ronald J Wong , Gary L Darmstadt , Maurice L Druzin , Virginia D Winn , Ronald S Gibbs , Xuefeng B Ling , Karl Sylvester , Brendan Carvalho , Michael P Snyder , Gary M Shaw , David K Stevenson , Kévin Contrepois , Martin S Angst , Nima Aghaeepour , Brice Gaudillière

Longitudinal multi-omics of host-microbe dynamics in prediabetes.

Nature

Avec: Wenyu Zhou , M Reza Sailani , Kévin Contrepois , Yanjiao Zhou , Sara Ahadi , Shana R Leopold , Martin J Zhang , Varsha Rao , Monika Avina , Tejaswini Mishra , Jethro Johnson , Brittany Lee-McMullen , Songjie Chen , Ahmed A Metwally , Thi Dong Binh Tran , Hoan Nguyen , Xin Zhou , Brandon Albright , Bo-Young Hong , Lauren Petersen , Eddy Bautista , Blake Hanson , Lei Chen , Daniel Spakowicz , Amir Bahmani , Denis Salins , Benjamin Leopold , Melanie Ashland , Orit Dagan-Rosenfeld , Shannon Rego , Patricia Limcaoco , Elizabeth Colbert , Candice Allister , Dalia Perelman , Colleen Craig , Eric Wei , Hassan Chaib , Daniel Hornburg , Jessilyn Dunn , Liang Liang , Sophia Miryam Schüssler-Fiorenza Rose , Kim Kukurba , Brian Piening , Hannes Rost , David Tse , Tracey McLaughlin , Erica Sodergren , George M Weinstock , Michael Snyder

Molecular Choreography of Acute Exercise.

Cell

Avec: Kévin Contrepois , Si Wu , Kegan J Moneghetti , Daniel Hornburg , Sara Ahadi , Ming-Shian Tsai , Ahmed A Metwally , Eric Wei , Brittany Lee-McMullen , Jeniffer V Quijada , Songjie Chen , Jeffrey W Christle , Mathew Ellenberger , Brunilda Balliu , Shalina Taylor , Matthew G Durrant , David A Knowles , Hani Choudhry , Melanie Ashland , Amir Bahmani , Brooke Enslen , Myriam Amsallem , Yukari Kobayashi , Monika Avina , Dalia Perelman , Sophia Miryam Schüssler-Fiorenza Rose , Wenyu Zhou , Euan A Ashley , Stephen B Montgomery , Hassan Chaib , Francois Haddad , Michael P Snyder

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

Nature methods

Avec: Saleh Alseekh , Asaph Aharoni , Yariv Brotman , Kévin Contrepois , John D'Auria , Jan Ewald , Jennifer C Ewald , Paul D Fraser , Patrick Giavalisco , Robert D Hall , Matthias Heinemann , Hannes Link , Jie Luo , Steffen Neumann , Jens Nielsen , Leonardo Perez de Souza , Kazuki Saito , Uwe Sauer , Frank C Schroeder , Stefan Schuster , Gary Siuzdak , Aleksandra Skirycz , Lloyd W Sumner , Michael P Snyder , Huiru Tang , Takayuki Tohge , Yulan Wang , Weiwei Wen , Si Wu , Guowang Xu , Nicola Zamboni , Alisdair R Fernie

In-depth triacylglycerol profiling using MS

Analytica chimica acta

Avec: Matias Cabruja , Josefina Priotti , Pablo Domizi , Katharina Papsdorf , Deanna L Kroetz , Anne Brunet , Kévin Contrepois , Michael P Snyder

Cross-Laboratory Standardization of Preclinical Lipidomics Using Differential Mobility Spectrometry and Multiple Reaction Monitoring.

Analytical chemistry

Avec: Mohan Ghorasaini , Yassene Mohammed , Jerzy Adamski , Lisa Bettcher , John A Bowden , Matias Cabruja , Kévin Contrepois , Mathew Ellenberger , Bharat Gajera , Mark Haid , Daniel Hornburg , Christie Hunter , Christina M Jones , Theo Klein , Oleg Mayboroda , Mina Mirzaian , Ruin Moaddel , Luigi Ferrucci , Jacqueline Lovett , Kenneth Nazir , Mackenzie Pearson , Baljit K Ubhi , Daniel Raftery , Fabien Riols , Rebekah Sayers , Eric J G Sijbrands , Michael P Snyder , Baolong Su , Vidya Velagapudi , Kevin J Williams , Yolanda B de Rijke , Martin Giera

Robust identification of temporal biomarkers in longitudinal omics studies.

Bioinformatics (Oxford, England)

Avec: Ahmed A Metwally , Tom Zhang , Si Wu , Ryan Kellogg , Wenyu Zhou , Kevin Contrepois , Hua Tang , Michael Snyder

Prediction of gestational age using urinary metabolites in term and preterm pregnancies.

Scientific reports

Avec: Kévin Contrepois , Songjie Chen , Mohammad S Ghaemi , Ronald J Wong , Fyezah Jehan , Sunil Sazawal , Abdullah H Baqui , Jeffrey S A Stringer , Anisur Rahman , Muhammad I Nisar , Usha Dhingra , Rasheda Khanam , Muhammad Ilyas , Arup Dutta , Usma Mehmood , Saikat Deb , Aneeta Hotwani , Said M Ali , Sayedur Rahman , Ambreen Nizar , Shaali M Ame , Sajid Muhammad , Aishwarya Chauhan , Waqasuddin Khan , Rubhana Raqib , Sayan Das , Salahuddin Ahmed , Tarik Hasan , Javairia Khalid , Mohammed H Juma , Nabidul H Chowdhury , Furqan Kabir , Fahad Aftab , Abdul Quaiyum , Alexander Manu , Sachiyo Yoshida , Rajiv Bahl , Jesmin Pervin , Joan T Price , Monjur Rahman , Margaret P Kasaro , James A Litch , Patrick Musonda , Bellington Vwalika , Auteur inconnu , Auteur inconnu , Gary Shaw , David K Stevenson , Nima Aghaeepour , Michael P Snyder

An exercise-inducible metabolite that suppresses feeding and obesity.

Nature

Avec: Veronica L Li , Yang He , Kévin Contrepois , Hailan Liu , Joon T Kim , Amanda L Wiggenhorn , Julia T Tanzo , Alan Sheng-Hwa Tung , Xuchao Lyu , Peter-James H Zushin , Robert S Jansen , Basil Michael , Kang Yong Loh , Andrew C Yang , Christian S Carl , Christian T Voldstedlund , Wei Wei , Stephanie M Terrell , Benjamin C Moeller , Rick M Arthur , Gareth A Wallis , Koen van de Wetering , Andreas Stahl , Bente Kiens , Erik A Richter , Steven M Banik , Michael P Snyder , Yong Xu , Jonathan Z Long

Design and Methods of the Validating Injury to the Renal Transplant Using Urinary Signatures (VIRTUUS) Study in Children.

Transplantation direct

Avec: Juhi Kumar , Kévin Contrepois , Michael Snyder , Paul C Grimm , Asha Moudgil , Jodi M Smith , Amy E Bobrowski , Priya S Verghese , David Hooper , Elizabeth Ingulli , Rachel Lestz , Patricia Weng , Janaiya L Reason , Tom D Blydt-Hansen , Manikkam Suthanthiran , Brendan Keating , Sandra Amaral

Untargeted metabolomic profiling in children identifies novel pathways in asthma and atopy.

The Journal of allergy and clinical immunology

Avec: Stéphanie Lejeune , Abhinav Kaushik , Ella S Parsons , Sharon Chinthrajah , Michael Snyder , Manisha Desai , Monali Manohar , Mary Prunicki , Kévin Contrepois , Philippe Gosset , Antoine Deschildre , Kari Nadeau

Multiomic analysis of familial adenomatous polyposis reveals molecular pathways associated with early tumorigenesis.

Nature cancer

Avec: Edward D Esplin , Casey Hanson , Si Wu , Aaron M Horning , Nasim Barapour , Stephanie A Nevins , Lihua Jiang , Kévin Contrepois , Hayan Lee , Tuhin K Guha , Zheng Hu , Rozelle Laquindanum , Meredith A Mills , Hassan Chaib , Roxanne Chiu , Ruiqi Jian , Joanne Chan , Mathew Ellenberger , Winston R Becker , Bahareh Bahmani , Aziz Khan , Basil Michael , Annika K Weimer , D Glen Esplin , Jeanne Shen , Samuel Lancaster , Emma Monte , Thomas V Karathanos , Uri Ladabaum , Teri A Longacre , Anshul Kundaje , Christina Curtis , William J Greenleaf , James M Ford , Michael P Snyder

Incremental value of diastolic stress test in identifying subclinical heart failure in patients with diabetes mellitus.

European heart journal. Cardiovascular Imaging

Avec: Tomoko Nishi , Yukari Kobayashi , Jeffrey W Christle , Nicholas Cauwenberghs , Kalyani Boralkar , Kegan Moneghetti , Myriam Amsallem , Kristofer Hedman , Kévin Contrepois , Jonathan Myers , Kenneth W Mahaffey , Ingela Schnittger , Tatiana Kuznetsova , Latha Palaniappan , Francois Haddad

Personal aging markers and ageotypes revealed by deep longitudinal profiling.

Nature medicine

Avec: Sara Ahadi , Wenyu Zhou , Sophia Miryam Schüssler-Fiorenza Rose , M Reza Sailani , Kévin Contrepois , Monika Avina , Melanie Ashland , Anne Brunet , Michael Snyder

Metabolic Dynamics and Prediction of Gestational Age and Time to Delivery in Pregnant Women.

Cell

Avec: Liang Liang , Marie-Louise Hee Rasmussen , Brian Piening , Xiaotao Shen , Songjie Chen , Hannes Röst , John K Snyder , Robert Tibshirani , Line Skotte , Norman Cy Lee , Kévin Contrepois , Bjarke Feenstra , Hanyah Zackriah , Michael Snyder , Mads Melbye

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

Bioinformatics (Oxford, England)

Avec: Mohammad Sajjad Ghaemi , Daniel B DiGiulio , Kévin Contrepois , Benjamin Callahan , Thuy T M Ngo , Brittany Lee-McMullen , Benoit Lehallier , Anna Robaczewska , David Mcilwain , Yael Rosenberg-Hasson , Ronald J Wong , Cecele Quaintance , Anthony Culos , Natalie Stanley , Athena Tanada , Amy Tsai , Dyani Gaudilliere , Edward Ganio , Xiaoyuan Han , Kazuo Ando , Leslie McNeil , Martha Tingle , Paul Wise , Ivana Maric , Marina Sirota , Tony Wyss-Coray , Virginia D Winn , Maurice L Druzin , Ronald Gibbs , Gary L Darmstadt , David B Lewis , Vahid Partovi Nia , Bruno Agard , Robert Tibshirani , Garry Nolan , Michael P Snyder , David A Relman , Stephen R Quake , Gary M Shaw , David K Stevenson , Martin S Angst , Brice Gaudilliere , Nima Aghaeepour

Altered Cardiac Energetics and Mitochondrial Dysfunction in Hypertrophic Cardiomyopathy.

Circulation

Avec: Sara Ranjbarvaziri , Kristina B Kooiker , Mathew Ellenberger , Giovanni Fajardo , Mingming Zhao , Alison Schroer Vander Roest , Rahel A Woldeyes , Tiffany T Koyano , Robyn Fong , Ning Ma , Lei Tian , Gavin M Traber , Frandics Chan , John Perrino , Sushma Reddy , Wah Chiu , Joseph C Wu , Joseph Y Woo , Kathleen M Ruppel , James A Spudich , Michael P Snyder , Kévin Contrepois , Daniel Bernstein

Temporal changes in soluble angiotensin-converting enzyme 2 associated with metabolic health, body composition, and proteome dynamics during a weight loss diet intervention: a randomized trial with implications for the COVID-19 pandemic.

The American journal of clinical nutrition

Avec: Nicholas Cauwenberghs , Mary Prunicki , František Sabovčik , Dalia Perelman , Kévin Contrepois , Xiao Li , Michael P Snyder , Kari C Nadeau , Tatiana Kuznetsova , Francois Haddad , Christopher D Gardner

Deep longitudinal multiomics profiling reveals two biological seasonal patterns in California.

Nature communications

Avec: M Reza Sailani , Ahmed A Metwally , Wenyu Zhou , Sophia Miryam Schüssler-Fiorenza Rose , Sara Ahadi , Kevin Contrepois , Tejaswini Mishra , Martin Jinye Zhang , Łukasz Kidziński , Theodore J Chu , Michael P Snyder

Proteomic signatures predict preeclampsia in individual cohorts but not across cohorts - implications for clinical biomarker studies.

The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians

Avec: Mohammad S Ghaemi , Adi L Tarca , Roberto Romero , Natalie Stanley , Ramin Fallahzadeh , Athena Tanada , Anthony Culos , Kazuo Ando , Xiaoyuan Han , Yair J Blumenfeld , Maurice L Druzin , Yasser Y El-Sayed , Ronald S Gibbs , Virginia D Winn , Kevin Contrepois , Xuefeng B Ling , Ronald J Wong , Gary M Shaw , David K Stevenson , Brice Gaudilliere , Nima Aghaeepour , Martin S Angst

A scalable, secure, and interoperable platform for deep data-driven health management.

Nature communications

Avec: Amir Bahmani , Arash Alavi , Thore Buergel , Sushil Upadhyayula , Qiwen Wang , Srinath Krishna Ananthakrishnan , Amir Alavi , Diego Celis , Dan Gillespie , Gregory Young , Ziye Xing , Minh Hoang Huynh Nguyen , Audrey Haque , Ankit Mathur , Josh Payne , Ghazal Mazaheri , Jason Kenichi Li , Pramod Kotipalli , Lisa Liao , Rajat Bhasin , Kexin Cha , Benjamin Rolnik , Alessandra Celli , Orit Dagan-Rosenfeld , Emily Higgs , Wenyu Zhou , Camille Lauren Berry , Katherine Grace Van Winkle , Kévin Contrepois , Utsab Ray , Keith Bettinger , Somalee Datta , Xiao Li , Michael P Snyder

Dynamic lipidome alterations associated with human health, disease and ageing.

Nature metabolism

Avec: Daniel Hornburg , Si Wu , Mahdi Moqri , Xin Zhou , Kevin Contrepois , Nasim Bararpour , Gavin M Traber , Baolong Su , Ahmed A Metwally , Monica Avina , Wenyu Zhou , Jessalyn M Ubellacker , Tejaswini Mishra , Sophia Miryam Schüssler-Fiorenza Rose , Paula B Kavathas , Kevin J Williams , Michael P Snyder

Multi-omics microsampling for the profiling of lifestyle-associated changes in health.

Nature biomedical engineering

Avec: Xiaotao Shen , Ryan Kellogg , Daniel J Panyard , Nasim Bararpour , Kevin Erazo Castillo , Brittany Lee-McMullen , Alireza Delfarah , Jessalyn Ubellacker , Sara Ahadi , Yael Rosenberg-Hasson , Ariel Ganz , Kévin Contrepois , Basil Michael , Ian Simms , Chuchu Wang , Daniel Hornburg , Michael P Snyder

Challenging obesity and sex based differences in resting energy expenditure using allometric modeling, a sub-study of the DIETFITS clinical trial.

Clinical nutrition ESPEN

Avec: Francois Haddad , Xiao Li , Dalia Perelman , Everton Jose Santana , Tatiana Kuznetsova , Nicholas Cauwenberghs , Vincent Busque , Kevin Contrepois , Michael P Snyder , Mary B Leonard , Christopher Gardner

Correction: Chaby et al. Cross-Platform Evaluation of Commercially Targeted and Untargeted Metabolomics Approaches to Optimize the Investigation of Psychiatric Disease.

Metabolites

Avec: Lauren E Chaby , Heather C Lasseter , Kévin Contrepois , Reza M Salek , Christoph W Turck , Andrew Thompson , Timothy Vaughan , Magali Haas , Andreas Jeromin

2023 White Paper on Recent Issues in Bioanalysis: Deuterated Drugs; LNP; Tumor/FFPE Biopsy; Targeted Proteomics; Small Molecule Covalent Inhibitors; Chiral Bioanalysis; Remote Regulatory Assessments; Sample Reconciliation/Chain of Custody

Bioanalysis

Avec: Mike Baratta , Wenying Jian , Shawna Hengel , Surinder Kaur , Jennifer Cunliffe , Jason Boer , Nicki Hughes , Sumit Kar , John Kellie , Yeoun Jin Kim , Michael Lassman , John Mehl , Ling Morgan , Joe Palandra , Hetal Sarvaiya , Jianing Zeng , Naiyu Zheng , Jian Wang , Long Yuan , Allena Ji , Christopher Kochansky , Lin Tao , Yue Huang , Estelle Maes , Luca Barbero , Kevin Contrepois , Luca Ferrari , Yunlin Fu , Jay Johnson , Barry Jones , Monika Kansal , Yang Lu , Noah Post , Honglue Holly Shen , Yongjun Y-J Xue , Yiyue Cynthia Zhang , Gopa Biswas , Seongeun Julia Cho , Anna Edmison , Kimberly Benson , Lee Abberley , Mitra Azadeh , Jennifer Francis , Fabio Garofolo , Shalini Gupta , Iordanka Dany Ivanova , Akiko Ishii-Watabe , Shane Karnik , Sean Kassim , Olga Kavetska , Steve Keller , Elham Kossary , Wenkui Li , Fred McCush , Dulcyane Neiva Mendes , Mohsen Rajabi Abhari , Kara Scheibner , Timothy Sikorski , Roland F Staack , Edward Tabler , Huaping Tang , Katty Wan , Yow-Ming Wang , Emma Whale , Li Yang , Jennifer Zimmer , Abbas Bandukwala , Xiulian Du , Olga Kholmanskikh , Sonja Kwadijk-de Gijsel , Meenu Wadhwa , Joshua Xu , Alessandra Buoninfante , Isabelle Cludts , Sandra Diebold , Kimberly Maxfield , Christian Mayer , Joao Pedras-Vasconcelos , Mohsen Rajabi Abhari , Sophie Shubow , Yoichi Tanaka , Omar Tounekti , Daniela Verthelyi , Leslie Wagner

Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease.

Cell host & microbe

Avec: Xin Zhou , Xiaotao Shen , Jethro S Johnson , Daniel J Spakowicz , Melissa Agnello , Wenyu Zhou , Monica Avina , Alexander Honkala , Faye Chleilat , Shirley Jingyi Chen , Kexin Cha , Shana Leopold , Chenchen Zhu , Lei Chen , Lin Lyu , Daniel Hornburg , Si Wu , Xinyue Zhang , Chao Jiang , Liuyiqi Jiang , Lihua Jiang , Ruiqi Jian , Andrew W Brooks , Meng Wang , Kévin Contrepois , Peng Gao , Sophia Miryam Schüssler-Fiorenza Rose , Thi Dong Binh Tran , Hoan Nguyen , Alessandra Celli , Bo-Young Hong , Eddy J Bautista , Yair Dorsett , Paula B Kavathas , Yanjiao Zhou , Erica Sodergren , George M Weinstock , Michael P Snyder

Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease.

bioRxiv : the preprint server for biology

Avec: Xin Zhou , Xiaotao Shen , Jethro S Johnson , Daniel J Spakowicz , Melissa Agnello , Wenyu Zhou , Monica Avina , Alexander Honkala , Faye Chleilat , Shirley Jingyi Chen , Kexin Cha , Shana Leopold , Chenchen Zhu , Lei Chen , Lin Lyu , Daniel Hornburg , Si Wu , Xinyue Zhang , Chao Jiang , Liuyiqi Jiang , Lihua Jiang , Ruiqi Jian , Andrew W Brooks , Meng Wang , Kévin Contrepois , Peng Gao , Sophia Miryam Schüssler-Fiorenza Rose , Thi Dong Binh Tran , Hoan Nguyen , Alessandra Celli , Bo-Young Hong , Eddy J Bautista , Yair Dorsett , Paula Kavathas , Yanjiao Zhou , Erica Sodergren , George M Weinstock , Michael P Snyder

Réseau de co-auteurs

Michael P Snyder 32 collaborations

Kevin Contrepois 10 collaborations

Daniel Hornburg 10 collaborations

Wenyu Zhou 10 collaborations

Mathew Ellenberger 9 collaborations

Sophia Miryam Schüssler-Fiorenza Rose 9 collaborations

Sara Ahadi 8 collaborations

Brittany Lee-McMullen 8 collaborations

Ronald J Wong 8 collaborations

David K Stevenson 8 collaborations

Nima Aghaeepour 8 collaborations

Si Wu 8 collaborations

Michael Snyder 8 collaborations

Songjie Chen 7 collaborations

Francois Haddad 7 collaborations

Virginia D Winn 7 collaborations

Gary M Shaw 7 collaborations

Martin S Angst 7 collaborations

Anthony Culos 6 collaborations

Xiaoyuan Han 6 collaborations

Brice Gaudilliere 6 collaborations

Dalia Perelman 6 collaborations

Tejaswini Mishra 5 collaborations

Tatiana Kuznetsova 5 collaborations

Ina A Stelzer 5 collaborations

Natalie Stanley 5 collaborations

Kazuo Ando 5 collaborations

Maurice L Druzin 5 collaborations

Gary L Darmstadt 5 collaborations

Melanie Ashland 5 collaborations

Xiaotao Shen 5 collaborations

Gavin M Traber 5 collaborations

Mohammad S Ghaemi 5 collaborations

Basil Michael 5 collaborations

Xin Zhou 5 collaborations

Ahmed A Metwally 5 collaborations

Martin Becker 4 collaborations

Ramin Fallahzadeh 4 collaborations

Ronald S Gibbs 4 collaborations

Stephen R Quake 4 collaborations

Amir Bahmani 4 collaborations

Kexin Cha 4 collaborations

M Reza Sailani 4 collaborations

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Jeffrey W Christle 4 collaborations

Monika Avina 4 collaborations

George M Weinstock 4 collaborations

Erica Sodergren 4 collaborations

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Jesmin Pervin 3 collaborations

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Alan L Chang 3 collaborations

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Amy S Tsai 3 collaborations

None None 3 collaborations

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Liang Liang 3 collaborations

Xuefeng B Ling 3 collaborations

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Meng Wang 3 collaborations

Xinyue Zhang 3 collaborations

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Tony Wyss-Coray 3 collaborations

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Yukari Kobayashi 3 collaborations

Anne Brunet 3 collaborations

Thi Dong Binh Tran 3 collaborations

Hoan Nguyen 3 collaborations

Bo-Young Hong 3 collaborations

Lei Chen 3 collaborations

Hassan Chaib 3 collaborations

Lihua Jiang 3 collaborations

Ruiqi Jian 3 collaborations

Xiao Li 3 collaborations

Alessandra Celli 3 collaborations

Monica Avina 3 collaborations

Varsha Rao 2 collaborations

Daniel Bernstein 2 collaborations

Muhammad Imran Nisar 2 collaborations

Usha Dhingra 2 collaborations

Muhammad Ilyas 2 collaborations

Sajid Muhammad 2 collaborations

Aishwarya Chauhan 2 collaborations

Tarik Hasan 2 collaborations

Fahad Aftab 2 collaborations

Abdul Quaiyum 2 collaborations

Alexander Manu 2 collaborations

Sachiyo Yoshida 2 collaborations

Rajiv Bahl 2 collaborations

Patrick Musonda 2 collaborations

James A Litch 2 collaborations

Mohammad Sajjad Ghaemi 2 collaborations

Camilo Espinosa 2 collaborations

Edward Ganio 2 collaborations

Dyani Gaudilliere 2 collaborations

Eileen S Tsai 2 collaborations

Martha Tingle 2 collaborations

Ivana Maric 2 collaborations

Paul H Wise 2 collaborations

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Aleksandra Leligdowicz 2 collaborations

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Antonio Gomez 2 collaborations

Pratik Sinha 2 collaborations

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Kathleen D Liu 2 collaborations

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Michael A Matthay 2 collaborations

Jeniffer V Quijada 2 collaborations

Tracey McLaughlin 2 collaborations

Yue Huang 2 collaborations

Lauren E Chaby 2 collaborations

Heather C Lasseter 2 collaborations

Reza M Salek 2 collaborations

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Andrew Thompson 2 collaborations

Timothy Vaughan 2 collaborations

Magali Haas 2 collaborations

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Li Wen 2 collaborations

Ying Ding 2 collaborations

Kristen Stevenson 2 collaborations

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Manisha Desai 2 collaborations

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Jessilyn Dunn 2 collaborations

Shannon Rego 2 collaborations

Shana R Leopold 2 collaborations

Patricia Limcaoco 2 collaborations

Tomoko Nishi 2 collaborations

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Jonathan Myers 2 collaborations

Latha Palaniappan 2 collaborations

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Eric Wei 2 collaborations

Brian Piening 2 collaborations

Matias Cabruja 2 collaborations

Baolong Su 2 collaborations

Kevin J Williams 2 collaborations

Ryan Kellogg 2 collaborations

Mary Prunicki 2 collaborations

Robert Tibshirani 2 collaborations

Yael Rosenberg-Hasson 2 collaborations

Athena Tanada 2 collaborations

Nasim Bararpour 2 collaborations

Paula B Kavathas 2 collaborations

Mohsen Rajabi Abhari 2 collaborations

Jethro S Johnson 2 collaborations

Daniel J Spakowicz 2 collaborations

Melissa Agnello 2 collaborations

Alexander Honkala 2 collaborations

Faye Chleilat 2 collaborations

Shirley Jingyi Chen 2 collaborations

Shana Leopold 2 collaborations

Chenchen Zhu 2 collaborations

Lin Lyu 2 collaborations

Chao Jiang 2 collaborations

Liuyiqi Jiang 2 collaborations

Andrew W Brooks 2 collaborations

Peng Gao 2 collaborations

Eddy J Bautista 2 collaborations

Yair Dorsett 2 collaborations

Francine E Garrett-Bakelman 1 collaboration

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Qiwen Wang 1 collaboration

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Long Yuan 1 collaboration

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