Genomic identification and expression analysis of the BBX transcription factor gene family in Petunia hybrida.
Amino Acid Sequence
Cold Temperature
Conserved Sequence
Droughts
Gene Expression Regulation, Plant
/ genetics
Genes, Plant
Hot Temperature
Multigene Family
Petunia
/ genetics
Phylogeny
Plant Proteins
/ biosynthesis
Promoter Regions, Genetic
RNA, Messenger
/ biosynthesis
RNA, Plant
/ biosynthesis
RNA-Seq
Salinity
Sequence Alignment
Sequence Homology, Amino Acid
Species Specificity
Stress, Physiological
/ genetics
Transcription Factors
/ biosynthesis
Abiotic stress
BBX gene family
Gene expression
Petunia hybrida
Journal
Molecular biology reports
ISSN: 1573-4978
Titre abrégé: Mol Biol Rep
Pays: Netherlands
ID NLM: 0403234
Informations de publication
Date de publication:
Aug 2020
Aug 2020
Historique:
received:
27
04
2020
accepted:
19
07
2020
pubmed:
30
7
2020
medline:
3
6
2021
entrez:
30
7
2020
Statut:
ppublish
Résumé
The B-box proteins (BBXs) are a class of zinc finger transcription factors containing one or two B-BOX domains that play important roles in plant growth, development and stress response. The petunia (Petunia hybrida) is a model ornamental plant, and its draft genome has been published. However, no systematic study of the BBX gene family in Petunia has been reported. In this study, a total of 28 BBX members from the Petunia genome were identified. We performed analyses of their phylogenetic relationships, structures, conserved motifs, promoter regions, and expression patterns. Based on the phylogenetic relationship, the PhBBXs were divided into six groups. Analysis of the gene structures and conserved motifs further confirmed the closer relationships in each group. Based on the RNA-seq data, the transcript abundance of PhBBXs in different tissues were divided into two major groups. The analysis of cis-elements showed that many stress responsive elements appeared in the promoter region of most PhBBX genes. The stress response patterns of PhBBXs were detected under drought, salinity, cold and heat treatments. Based on the RNA-seq data, we found that 3 genes responded to drought, 8 genes responded to salt, 18 genes responded to cold, and 15 genes responded to heat. In conclusion, this study may facilitate further functional studies of BBXs in Petunia.
Identifiants
pubmed: 32725605
doi: 10.1007/s11033-020-05678-y
pii: 10.1007/s11033-020-05678-y
doi:
Substances chimiques
Plant Proteins
0
RNA, Messenger
0
RNA, Plant
0
Transcription Factors
0
Types de publication
Comparative Study
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
6027-6041Subventions
Organisme : National Natural Science Foundation of China
ID : 31701953
Organisme : Natural Science Foundation of Guangdong Province
ID : 2019A1515012168
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