Adam Shlien

Affiliations

Program in Genetics and Genome Biology, The Hospital for Sick Children (SickKids), University of Toronto, Toronto, ON, Canada.
Laboratory of Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.

ORCID: http://orcid.org/0000-0002-0368-5370

Publications (44)

Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice.

Oncogene

Avec: Peter G Hendrickson , Kristianne M Oristian , MaKenna R Browne , Lixia Luo , Yan Ma , Diana M Cardona , Joshua O Nash , Pedro L Ballester , Scott Davidson , Adam Shlien , Corinne M Linardic , David G Kirsch

Vaginal Metastases of Wilms' Tumor in a Pediatric Patient: A Rare Case.

Journal of pediatric and adolescent gynecology

Avec: Kristina Arion , Stephanie Dufour , Raveena Ramphal , Anita Villani , David Malkin , Adam Shlien , Nisha Kanwar , Sarah Sawyer , Tania Dumont

The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations.

Nature cancer

Avec: Anita Villani , Scott Davidson , Nisha Kanwar , Winnie W Lo , Yisu Li , Sarah Cohen-Gogo , Fabio Fuligni , Lisa-Monique Edward , Nicholas Light , Mehdi Layeghifard , Ricardo Harripaul , Larissa Waldman , Bailey Gallinger , Federico Comitani , Ledia Brunga , Reid Hayes , Nathaniel D Anderson , Arun K Ramani , Kyoko E Yuki , Sasha Blay , Brittney Johnstone , Cara Inglese , Rawan Hammad , Catherine Goudie , Andrew Shuen , Jonathan D Wasserman , Rosemarie E Venier , Marianne Eliou , Miranda Lorenti , Carol Ann Ryan , Michael Braga , Meagan Gloven-Brown , Jianan Han , Maria Montero , Famida Spatare , James A Whitlock , Stephen W Scherer , Kathy Chun , Martin J Somerville , Cynthia Hawkins , Mohamed Abdelhaleem , Vijay Ramaswamy , Gino R Somers , Lianna Kyriakopoulou , Johann Hitzler , Mary Shago , Daniel A Morgenstern , Uri Tabori , Stephen Meyn , Meredith S Irwin , David Malkin , Adam Shlien

Diagnostic classification of childhood cancer using multiscale transcriptomics.

Nature medicine

Avec: Federico Comitani , Joshua O Nash , Sarah Cohen-Gogo , Astra I Chang , Timmy T Wen , Anant Maheshwari , Bipasha Goyal , Earvin S Tio , Kevin Tabatabaei , Chelsea Mayoh , Regis Zhao , Ben Ho , Ledia Brunga , John E G Lawrence , Petra Balogh , Adrienne M Flanagan , Sarah Teichmann , Annie Huang , Vijay Ramaswamy , Johann Hitzler , Jonathan D Wasserman , Rebecca A Gladdy , Brendan C Dickson , Uri Tabori , Mark J Cowley , Sam Behjati , David Malkin , Anita Villani , Meredith S Irwin , Adam Shlien

SHP2 inhibition with TNO155 increases efficacy and overcomes resistance of ALK inhibitors in neuroblastoma.

Cancer research communications

Avec: Ivette Valencia-Sama , Lynn Kee , Gabriella Christopher , Michael Ohh , Mehdi Layeghifard , Adam Shlien , Madeline N Hayes , Meredith S Irwin

Correction to: DNA methylation signature is prognostic of choroid plexus tumor aggressiveness.

Clinical epigenetics

Avec: Malgorzata Pienkowska , Sanaa Choufani , Andrei L Turinsky , Tanya Guha , Diana M Merino , Ana Novokmet , Michael Brudno , Rosanna Weksberg , Adam Shlien , Cynthia Hawkins , Eric Bouffet , Uri Tabori , Richard J Gilbertson , Jonathan L Finlay , Nada Jabado , Christian Thomas , Martin Sill , David Capper , Martin Hasselblatt , David Malkin

Genomic predictors of response to PD-1 inhibition in children with germline DNA replication repair deficiency.

Nature medicine

Avec: Anirban Das , Sumedha Sudhaman , Daniel Morgenstern , Ailish Coblentz , Jiil Chung , Simone C Stone , Noor Alsafwani , Zhihui Amy Liu , Ola Abu Al Karsaneh , Shirin Soleimani , Hagay Ladany , David Chen , Matthew Zatzman , Vanja Cabric , Liana Nobre , Vanessa Bianchi , Melissa Edwards , Lauren C Sambira Nahum , Ayse B Ercan , Arash Nabbi , Shlomi Constantini , Rina Dvir , Michal Yalon-Oren , Gadi Abebe Campino , Shani Caspi , Valerie Larouche , Alyssa Reddy , Michael Osborn , Gary Mason , Scott Lindhorst , Annika Bronsema , Vanan Magimairajan , Enrico Opocher , Rebecca Loret De Mola , Magnus Sabel , Charlotta Frojd , David Sumerauer , David Samuel , Kristina Cole , Stefano Chiaravalli , Maura Massimino , Patrick Tomboc , David S Ziegler , Ben George , An Van Damme , Nobuko Hijiya , David Gass , Rose B McGee , Oz Mordechai , Daniel C Bowers , Theodore W Laetsch , Alexander Lossos , Deborah T Blumenthal , Tomasz Sarosiek , Lee Yi Yen , Jeffrey Knipstein , Anne Bendel , Lindsey M Hoffman , Sandra Luna-Fineman , Stefanie Zimmermann , Isabelle Scheers , Kim E Nichols , Michal Zapotocky , Jordan R Hansford , John M Maris , Peter Dirks , Michael D Taylor , Abhaya V Kulkarni , Manohar Shroff , Derek S Tsang , Anita Villani , Wei Xu , Melyssa Aronson , Carol Durno , Adam Shlien , David Malkin , Gad Getz , Yosef E Maruvka , Pamela S Ohashi , Cynthia Hawkins , Trevor J Pugh , Eric Bouffet , Uri Tabori

A primary DICER1-sarcoma with KRAS and TP53 mutations in a child with suspected ECCL.

Brain tumor pathology

Avec: Kaiyun Yang , Justin Wang , Nisha Kanwar , Anita Villani , Olufemi Ajani , Adam Fleming , Vikas Patil , Yasin Mamatjan , Qingxia Wei , David Malkin , Adam Shlien , Gelareh Zadeh , John Provias

A systematic assessment of the impact of rare canonical splice site variants on splicing using functional and in silico methods.

HGG advances

Avec: Rachel Y Oh , Ali Almail , David Cheerie , George Guirguis , Huayun Hou , Kyoko E Yuki , Bushra Haque , Bhooma Thiruvahindrapuram , Christian R Marshall , Roberto Mendoza-Londono , Adam Shlien , Lianna G Kyriakopoulou , Susan Walker , James J Dowling , Michael D Wilson , Gregory Costain

Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis.

Nature communications

Avec: Nicholas Light , Mehdi Layeghifard , Ayush Attery , Vallijah Subasri , Matthew Zatzman , Nathaniel D Anderson , Rupal Hatkar , Sasha Blay , David Chen , Ana Novokmet , Fabio Fuligni , James Tran , Richard de Borja , Himanshi Agarwal , Larissa Waldman , Lisa M Abegglen , Daniel Albertson , Jonathan L Finlay , Jordan R Hansford , Sam Behjati , Anita Villani , Moritz Gerstung , Ludmil B Alexandrov , Gino R Somers , Joshua D Schiffman , Varda Rotter , David Malkin , Adam Shlien

Combined immunotherapy improves outcome for replication repair deficient (RRD) high-grade glioma failing anti-PD1 monotherapy: A report from the International RRD Consortium.

Cancer discovery

Avec: Anirban Das , Nicholas R Fernandez , Adrian Levine , Vanessa Bianchi , Lucie K Stengs , Jiil Chung , Logine Negm , Jose Rafael Dimayacyac , Yuan Chang , Liana Nobre , Ayse B Ercan , Santiago Sanchez-Ramirez , Sumedha Sudhaman , Melissa Edwards , Valerie Larouche , David Samuel , An Van Damme , David Gass , David S Ziegler , Stefan S Bielack , Carl Koschmann , Shayna Zelcer , Michal Yalon-Oren , Gadi Abede Campino , Tomasz Sarosiek , Kim E Nichols , Rebecca Loret De Mola , Kevin Bielamowicz , Magnus Sabel , Charlotta A Frojd , Matthew D Wood , Jason M Glover , Yi-Yen Lee , Magimairajan Vanan , Jenny K Adamski , Sebastien Perreault , Omar Chamdine , Magnus Aasved Hjort , Michal Zapotocky , Fernando Carceller , Erin Wright , Ivana Fedorakova , Alexander Lossos , Ryuma Tanaka , Michael Osborn , Deborah T Blumenthal , Melyssa Aronson , Ute Bartels , Annie Huang , Vijay Ramaswamy , David Malkin , Adam Shlien , Anita Villani , Peter B Dirks , Trevor J Pugh , Gad Getz , Yosef E Maruvka , Derek S Tsang , Birgit Ertl-Wagner , Cynthia Hawkins , Eric Bouffet , Daniel A Morgenstern , Uri Tabori

The BRD4-NUT Fusion Alone Drives Malignant Transformation of NUT Carcinoma.

Cancer research

Avec: R Taylor Durall , Julianna Huang , Luke Wojenski , Yeying Huang , Prafulla C Gokhale , Brittaney A Leeper , Joshua O Nash , Pedro L Ballester , Scott Davidson , Adam Shlien , Emmanuel Sotirakis , Fabien Bertaux , Vincent Dubus , Jia Luo , Catherine J Wu , Derin B Keskin , Kyle P Eagen , Geoffrey I Shapiro , Christopher A French

DNA methylation signature is prognostic of choroid plexus tumor aggressiveness.

Clinical epigenetics

mTOR Inhibitors as a New Therapeutic Strategy in Treatment Resistant Epilepsy in Hemimegalencephaly: A Case Report.

Journal of child neurology

Avec: Qi Xu , Shimrit Uliel-Sibony , Christopher Dunham , Harvey Sarnat , Laura Flores-Sarnat , Ledia Brunga , Scott Davidson , Winnie Lo , Adam Shlien , Mary Connolly , Cyrus Boelman , Anita Datta

Mutations in the RAS/MAPK Pathway Drive Replication Repair-Deficient Hypermutated Tumors and Confer Sensitivity to MEK Inhibition.

Cancer discovery

Avec: Brittany B Campbell , Melissa A Galati , Simone C Stone , Alexandra N Riemenschneider , Melissa Edwards , Sumedha Sudhaman , Robert Siddaway , Martin Komosa , Nuno M Nunes , Liana Nobre , A Sorana Morrissy , Matthew Zatzman , Michal Zapotocky , Lazar Joksimovic , Sangeetha N Kalimuthu , David Samuel , Gary Mason , Eric Bouffet , Daniel A Morgenstern , Melyssa Aronson , Carol Durno , David Malkin , John M Maris , Michael D Taylor , Adam Shlien , Trevor J Pugh , Pamela S Ohashi , Cynthia E Hawkins , Uri Tabori

Performance of the McGill Interactive Pediatric OncoGenetic Guidelines for Identifying Cancer Predisposition Syndromes.

JAMA oncology

Avec: Catherine Goudie , Leora Witkowski , Noelle Cullinan , Lara Reichman , Ian Schiller , Melissa Tachdjian , Linlea Armstrong , Katherine A Blood , Josée Brossard , Ledia Brunga , Chantel Cacciotti , Kimberly Caswell , Sonia Cellot , Mary Egan Clark , Catherine Clinton , Hallie Coltin , Kathleen Felton , Conrad V Fernandez , Adam J Fleming , Noemi Fuentes-Bolanos , Paul Gibson , Ronald Grant , Rawan Hammad , Lynn W Harrison , Meredith S Irwin , Donna L Johnston , Sarah Kane , Lucie Lafay-Cousin , Irene Lara-Corrales , Valerie Larouche , Natalie Mathews , M Stephen Meyn , Orli Michaeli , Renée Perrier , Meghan Pike , Angela Punnett , Vijay Ramaswamy , Jemma Say , Gino Somers , Uri Tabori , My Linh Thibodeau , Annie-Kim Toupin , Katherine M Tucker , Kalene van Engelen , Stephanie Vairy , Nicolas Waespe , Meera Warby , Jonathan D Wasserman , James A Whitlock , Daniel Sinnett , Nada Jabado , Paul C Nathan , Adam Shlien , Junne Kamihara , Rebecca J Deyell , David S Ziegler , Kim E Nichols , Nandini Dendukuri , David Malkin , Anita Villani , William D Foulkes

Single-cell diploid Hi-C reveals the role of spatial aggregations in complex rearrangements and KMT2A fusions in leukemia.

Genome biology

Avec: Zhihao Xing , Huirong Mai , Xiaorong Liu , Xiaoying Fu , Xingliang Zhang , Lichun Xie , Yunsheng Chen , Adam Shlien , Feiqiu Wen

Trio RNA sequencing in a cohort of medically complex children.

American journal of human genetics

Avec: Ashish R Deshwar , Kyoko E Yuki , Huayun Hou , Yijing Liang , Tayyaba Khan , Alper Celik , Arun Ramani , Roberto Mendoza-Londono , Christian R Marshall , Michael Brudno , Adam Shlien , M Stephen Meyn , Robin Z Hayeems , Brandon J McKinlay , Panagiota Klentrou , Michael D Wilson , Lianna Kyriakopoulou , Gregory Costain , James J Dowling

BARD1 germline variants induce haploinsufficiency and DNA repair defects in neuroblastoma.

Journal of the National Cancer Institute

Avec: Michael P Randall , Laura E Egolf , Zalman Vaksman , Minu Samanta , Matthew Tsang , David Groff , J Perry Evans , Jo Lynne Rokita , Mehdi Layeghifard , Adam Shlien , John M Maris , Sharon J Diskin , Kristopher R Bosse

SYNCHRONOUS T-LYMPHOBLASTIC LYMPHOMA AND NEUROBLASTOMA IN A 3-YEAR-OLD WITH NOVEL GERMLINE SMARCA4 AND EZH2 VARIANTS.

Cold Spring Harbor molecular case studies

Avec: Pauline Tibout , Joel Livingston , Nisha Kanwar , Kyoko E Yuki , Adam Shlien , Bo Ngan , Meredith S Irwin , Daniel A Morgenstern , Johann Hitzler , Anita Villani , Sarah Cohen-Gogo

miR-34a is a tumor suppressor in zebrafish and its expression levels impact metabolism, hematopoiesis and DNA damage.

PLoS genetics

Avec: Sergey V Prykhozhij , Kevin Ban , Zane L Brown , Kim Kobar , Gabriel Wajnberg , Charlotte Fuller , Simi Chacko , Jacynthe Lacroix , Nicolas Crapoulet , Craig Midgen , Adam Shlien , David Malkin , Jason N Berman

First report of t(5;11) KMT2A-MAML1 fusion in de novo infant acute lymphoblastic leukemia.

Cancer genetics

Avec: Sneha Tandon , Mary Shago , Scott Davidson , Nisha Kanwar , Fabio Fuligni , Adam Shlien , James Whitlock , Anita Villani , Oussama Abla

Single cell derived mRNA signals across human kidney tumors.

Nature communications

Avec: Matthew D Young , Thomas J Mitchell , Lars Custers , Thanasis Margaritis , Francisco Morales-Rodriguez , Kwasi Kwakwa , Eleonora Khabirova , Gerda Kildisiute , Thomas R W Oliver , Ronald R de Krijger , Marry M van den Heuvel-Eibrink , Federico Comitani , Alice Piapi , Eva Bugallo-Blanco , Christine Thevanesan , Christina Burke , Elena Prigmore , Kirsty Ambridge , Kenny Roberts , Felipe A Vieira Braga , Tim H H Coorens , Ignacio Del Valle , Anna Wilbrey-Clark , Lira Mamanova , Grant D Stewart , Vincent J Gnanapragasam , Dyanne Rampling , Neil Sebire , Nicholas Coleman , Liz Hook , Anne Warren , Muzlifah Haniffa , Marcel Kool , Stefan M Pfister , John C Achermann , Xiaoling He , Roger A Barker , Adam Shlien , Omer A Bayraktar , Sarah A Teichmann , Frank C Holstege , Kerstin B Meyer , Jarno Drost , Karin Straathof , Sam Behjati

Pathogenic Germline Variants in Cancer Susceptibility Genes in Children and Young Adults With Rhabdomyosarcoma.

JCO precision oncology

Avec: Jung Kim , Nicholas Light , Vallijah Subasri , Erin L Young , Talia Wegman-Ostrosky , Donald A Barkauskas , David Hall , Philip J Lupo , Rajesh Patidar , Luke D Maese , Kristine Jones , Mingyi Wang , Sean V Tavtigian , Dongjing Wu , Adam Shlien , Frank Telfer , Anna Goldenberg , Stephen X Skapek , Jun S Wei , Xinyu Wen , Daniel Catchpoole , Douglas S Hawkins , Joshua D Schiffman , Javed Khan , David Malkin , Douglas R Stewart

Genomic Microsatellite Signatures Identify Germline Mismatch Repair Deficiency and Risk of Cancer Onset.

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

Avec: Jiil Chung , Logine Negm , Vanessa Bianchi , Lucie Stengs , Anirban Das , Zhihui Amy Liu , Sumedha Sudhaman , Melyssa Aronson , Ledia Brunga , Melissa Edwards , Victoria Forster , Martin Komosa , Scott Davidson , Jodi Lees , Patrick Tomboc , David Samuel , Roula Farah , Anne Bendel , Jeffrey Knipstein , Kami Wolfe Schneider , Agnes Reschke , Shayna Zelcer , Alexandra Zorzi , Robert McWilliams , William D Foulkes , Raymond Bedgood , Lindsay Peterson , Sara Rhode , An Van Damme , Isabelle Scheers , Sharon Gardner , Gabriel Robbins , Magimairajan Issai Vanan , M Stephen Meyn , Rebecca Auer , Brandie Leach , Carol Burke , Anita Villani , David Malkin , Eric Bouffet , Annie Huang , Michael D Taylor , Carol Durno , Adam Shlien , Cynthia Hawkins , Gad Getz , Yosef E Maruvka , Uri Tabori , Auteur inconnu

Signatures of copy number alterations in human cancer.

Nature

Avec: Christopher D Steele , Ammal Abbasi , S M Ashiqul Islam , Amy L Bowes , Azhar Khandekar , Kerstin Haase , Shadi Hames-Fathi , Dolapo Ajayi , Annelien Verfaillie , Pawan Dhami , Alex McLatchie , Matt Lechner , Nicholas Light , Adam Shlien , David Malkin , Andrew Feber , Paula Proszek , Tom Lesluyes , Fredrik Mertens , Adrienne M Flanagan , Maxime Tarabichi , Peter Van Loo , Ludmil B Alexandrov , Nischalan Pillay

TMBur: a distributable tumor mutation burden approach for whole genome sequencing.

BMC medical genomics

Avec: Emma Titmuss , Richard D Corbett , Scott Davidson , Sanna Abbasi , Laura M Williamson , Erin D Pleasance , Adam Shlien , Daniel J Renouf , Steven J M Jones , Janessa Laskin , Marco A Marra

An international working group consensus report for the prioritization of molecular biomarkers for Ewing sarcoma.

NPJ precision oncology

Avec: David S Shulman , Sarah B Whittle , Didier Surdez , Kelly M Bailey , Enrique de Álava , Jason T Yustein , Adam Shlien , Masanori Hayashi , Alexander J R Bishop , Brian D Crompton , Steven G DuBois , Neerav Shukla , Patrick J Leavey , Stephen L Lessnick , Heinrich Kovar , Olivier Delattre , Thomas G P Grünewald , Cristina R Antonescu , Ryan D Roberts , Jeffrey A Toretsky , Franck Tirode , Richard Gorlick , Katherine A Janeway , Damon Reed , Elizabeth R Lawlor , Patrick J Grohar

Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome.

Cancer research communications

Avec: Vallijah Subasri , Nicholas Light , Nisha Kanwar , Jack Brzezinski , Ping Luo , Jordan R Hansford , Elizabeth Cairney , Carol Portwine , Christine Elser , Jonathan L Finlay , Kim E Nichols , Noa Alon , Ledia Brunga , Jo Anson , Wendy Kohlmann , Kelvin C de Andrade , Payal P Khincha , Sharon A Savage , Joshua D Schiffman , Rosanna Weksberg , Trevor J Pugh , Anita Villani , Adam Shlien , Anna Goldenberg , David Malkin

bioRxiv : the preprint server for biology

A slipped-CAG DNA-binding small molecule induces trinucleotide-repeat contractions in vivo.

Nature genetics

Avec: Masayuki Nakamori , Gagan B Panigrahi , Stella Lanni , Terence Gall-Duncan , Hideki Hayakawa , Hana Tanaka , Jennifer Luo , Takahiro Otabe , Jinxing Li , Akihiro Sakata , Marie-Christine Caron , Niraj Joshi , Tanya Prasolava , Karen Chiang , Jean-Yves Masson , Marc S Wold , Xiaoxiao Wang , Marietta Y W T Lee , John Huddleston , Katherine M Munson , Scott Davidson , Mehdi Layeghifard , Lisa-Monique Edward , Richard Gallon , Mauro Santibanez-Koref , Asako Murata , Masanori P Takahashi , Evan E Eichler , Adam Shlien , Kazuhiko Nakatani , Hideki Mochizuki , Christopher E Pearson

Cooperation of cancer drivers with regulatory germline variants shapes clinical outcomes.

Nature communications

Avec: Julian Musa , Florencia Cidre-Aranaz , Marie-Ming Aynaud , Martin F Orth , Maximilian M L Knott , Olivier Mirabeau , Gal Mazor , Mor Varon , Tilman L B Hölting , Sandrine Grossetête , Moritz Gartlgruber , Didier Surdez , Julia S Gerke , Shunya Ohmura , Aruna Marchetto , Marlene Dallmayer , Michaela C Baldauf , Stefanie Stein , Giuseppina Sannino , Jing Li , Laura Romero-Pérez , Frank Westermann , Wolfgang Hartmann , Uta Dirksen , Melissa Gymrek , Nathaniel D Anderson , Adam Shlien , Barak Rotblat , Thomas Kirchner , Olivier Delattre , Thomas G P Grünewald

Diverse Oncogenic Fusions and Distinct Gene Expression Patterns Define the Genomic Landscape of Pediatric Papillary Thyroid Carcinoma.

Cancer research

Avec: Ana Stosic , Fabio Fuligni , Nathaniel D Anderson , Scott Davidson , Richard de Borja , Meryl Acker , Vito Forte , Paolo Campisi , Evan J Propst , Nikolaus E Wolter , Rose Chami , Ozgur Mete , David Malkin , Adam Shlien , Jonathan D Wasserman

Cellular and molecular architecture of hematopoietic stem cells and progenitors in genetic models of bone marrow failure.

JCI insight

Avec: Stephanie Heidemann , Brian Bursic , Sasan Zandi , Hongbing Li , Sagi Abelson , Robert J Klaassen , Sharon Abish , Meera Rayar , Vicky R Breakey , Houtan Moshiri , Santhosh Dhanraj , Richard de Borja , Adam Shlien , John E Dick , Yigal Dror

Ethical and Analytic Challenges With Genomic Sequencing of Relapsed Hematologic Malignancies Following Allogeneic Hematopoietic Stem-Cell Transplantation.

JCO precision oncology

Avec: Bilal Marwa , Joerg Krueger , Elizabeth A Stephenson , Scott Davidson , David Allan , Bartha Knoppers , Ma'n Zawati , Patrick Sullivan , Adam Shlien , David Malkin , Conrad V Fernandez , Anita Villani

Comprehensive profiling of mRNA splicing indicates that GC content signals altered cassette exon inclusion in Ewing sarcoma.

NAR cancer

Avec: Garrett T Graham , Saravana P Selvanathan , Stefan K Zöllner , Emily Stahl , Adam Shlien , Natasha J Caplen , Aykut Üren , Jeffrey A Toretsky

Non-rhabdomyosarcoma soft tissue sarcomas diagnosed in patients at a young age. An overview of clinical, pathological, and molecular findings.

Pediatric blood & cancer

Avec: Samuele Renzi , Noelle Cullinan , Sarah Cohen-Gogo , Karin Langenberg-Ververgaert , Orli Michaeli , Jalila Alkendi , Nisha Kanwar , Winnie Lo , Anita Villani , Adam Shlien , David Malkin , Anne L Ryan , Bailey Gallinger , Katrina Ingley , Sevan Hopyan , Abha Gupta , Rose Chami

DNA Polymerase and Mismatch Repair Exert Distinct Microsatellite Instability Signatures in Normal and Malignant Human Cells.

Cancer discovery

Avec: Jiil Chung , Yosef E Maruvka , Sumedha Sudhaman , Jacalyn Kelly , Nicholas J Haradhvala , Vanessa Bianchi , Melissa Edwards , Victoria J Forster , Nuno M Nunes , Melissa A Galati , Martin Komosa , Shriya Deshmukh , Vanja Cabric , Scott Davidson , Matthew Zatzman , Nicholas Light , Reid Hayes , Ledia Brunga , Nathaniel D Anderson , Ben Ho , Karl P Hodel , Robert Siddaway , A Sorana Morrissy , Daniel C Bowers , Valérie Larouche , Annika Bronsema , Michael Osborn , Kristina A Cole , Enrico Opocher , Gary Mason , Gregory A Thomas , Ben George , David S Ziegler , Scott Lindhorst , Magimairajan Vanan , Michal Yalon-Oren , Alyssa T Reddy , Maura Massimino , Patrick Tomboc , An Van Damme , Alexander Lossos , Carol Durno , Melyssa Aronson , Daniel A Morgenstern , Eric Bouffet , Annie Huang , Michael D Taylor , Anita Villani , David Malkin , Cynthia E Hawkins , Zachary F Pursell , Adam Shlien , Thomas A Kunkel , Gad Getz , Uri Tabori

Lineage-defined leiomyosarcoma subtypes emerge years before diagnosis and determine patient survival.

Nature communications

Avec: Nathaniel D Anderson , Yael Babichev , Fabio Fuligni , Federico Comitani , Mehdi Layeghifard , Rosemarie E Venier , Stefan C Dentro , Anant Maheshwari , Sheena Guram , Claire Wunker , J Drew Thompson , Kyoko E Yuki , Huayun Hou , Matthew Zatzman , Nicholas Light , Marcus Q Bernardini , Jay S Wunder , Irene L Andrulis , Peter Ferguson , Albiruni R Abdul Razak , Carol J Swallow , James J Dowling , Rima S Al-Awar , Richard Marcellus , Marjan Rouzbahman , Moritz Gerstung , Daniel Durocher , Ludmil B Alexandrov , Brendan C Dickson , Rebecca A Gladdy , Adam Shlien

Widespread hypertranscription in aggressive human cancers.

Science advances

Avec: Matthew Zatzman , Fabio Fuligni , Ryan Ripsman , Tannu Suwal , Federico Comitani , Lisa-Monique Edward , Rob Denroche , Gun Ho Jang , Faiyaz Notta , Steven Gallinger , Saravana P Selvanathan , Jeffrey A Toretsky , Matthew D Hellmann , Uri Tabori , Annie Huang , Adam Shlien

Genomic and clinical characterization of a familial GIST kindred intolerant to imatinib.

NPJ genomic medicine

Avec: K M Ingley , M Zatzman , A M Fontebasso , W Lo , V Subasri , A Goldenberg , Y Li , S Davidson , N Kanwar , L Waldman , L Brunga , Y Babichev , E G Demicco , A Gupta , M Szybowska , S Thipphavong , D Malkin , A Villani , A Shlien , R A Gladdy , R H Kim

Clinical and biological landscape of constitutional mismatch-repair deficiency syndrome: an International Replication Repair Deficiency Consortium cohort study.

The Lancet. Oncology

Avec: Ayse Bahar Ercan , Melyssa Aronson , Nicholas R Fernandez , Yuan Chang , Adrian Levine , Zhihui Amy Liu , Logine Negm , Melissa Edwards , Vanessa Bianchi , Lucie Stengs , Jiil Chung , Abeer Al-Battashi , Agnes Reschke , Alex Lion , Alia Ahmad , Alvaro Lassaletta , Alyssa T Reddy , Amir F Al-Darraji , Amish C Shah , An Van Damme , Anne Bendel , Aqeela Rashid , Ashley S Margol , Bethany L Kelly , Bojana Pencheva , Brandie Heald , Brianna Lemieux-Anglin , Bruce Crooks , Carl Koschmann , Catherine Gilpin , Christopher C Porter , David Gass , David Samuel , David S Ziegler , Deborah T Blumenthal , Dennis John Kuo , Dima Hamideh , Donald Basel , Dong-Anh Khuong-Quang , Duncan Stearns , Enrico Opocher , Fernando Carceller , Hagit Baris Feldman , Helen Toledano , Ira Winer , Isabelle Scheers , Ivana Fedorakova , Jack M Su , Jaime Vengoechea , Jaroslav Sterba , Jeffrey Knipstein , Jordan R Hansford , Julieta Rita Gonzales-Santos , Kanika Bhatia , Kevin J Bielamowicz , Khurram Minhas , Kim E Nichols , Kristina A Cole , Lynette Penney , Magnus Aasved Hjort , Magnus Sabel , Maria Joao Gil-da-Costa , Matthew J Murray , Matthew Miller , Maude L Blundell , Maura Massimino , Maysa Al-Hussaini , Mazin F Al-Jadiry , Melanie A Comito , Michael Osborn , Michael P Link , Michal Zapotocky , Mithra Ghalibafian , Najma Shaheen , Naureen Mushtaq , Nicolas Waespe , Nobuko Hijiya , Noemi Fuentes-Bolanos , Olfat Ahmad , Omar Chamdine , Paromita Roy , Pavel N Pichurin , Per Nyman , Rachel Pearlman , Rebecca C Auer , Reghu K Sukumaran , Rejin Kebudi , Rina Dvir , Robert Raphael , Ronit Elhasid , Rose B McGee , Rose Chami , Ryan Noss , Ryuma Tanaka , Salmo Raskin , Santanu Sen , Scott Lindhorst , Sebastien Perreault , Shani Caspi , Shazia Riaz , Shlomi Constantini , Sophie Albert , Stanley Chaleff , Stefan Bielack , Stefano Chiaravalli , Stuart Louis Cramer , Sumita Roy , Suzanne Cahn , Suzanne Penna , Syed Ahmer Hamid , Tariq Ghafoor , Uzma Imam , Valerie Larouche , Vanan Magimairajan Issai , William D Foulkes , Yi Yen Lee , Paul C Nathan , Yosef E Maruvka , Mary-Louise C Greer , Carol Durno , Adam Shlien , Birgit Ertl-Wagner , Anita Villani , David Malkin , Cynthia Hawkins , Eric Bouffet , Anirban Das , Uri Tabori

The Virtual Child.

Cancer discovery

Avec: Richard J Gilbertson , Sam Behjati , Anna-Lisa Böttcher , Marianne E Bronner , Matthew Burridge , Henrick Clausing , Harry Clifford , Tracey Danaher , Laura K Donovan , Jarno Drost , Alexander M M Eggermont , Chris Emerson , Mona G Flores , Petra Hamerlik , Nada Jabado , Andrew Jones , Henrick Kaessmann , Claudia L Kleinman , Marcel Kool , Lena M Kutscher , Gavin Lindberg , Emily Linnane , John C Marioni , John M Maris , Michelle Monje , Alexandra Macaskill , Steven Niederer , Paul A Northcott , Elizabeth Peeters , Willemijn Plieger-van Solkema , Liane Preußner , Anne C Rios , Karsten Rippe , Peter Sandford , Nikolaos G Sgourakis , Adam Shlien , Pete Smith , Karin Straathof , Patrick J Sullivan , Mario L Suvà , Michael D Taylor , Emma Thompson , Roser Vento-Tormo , Brandon J Wainwright , Robert J Wechsler-Reya , Frank Westermann , Shannon Winslade , Bissan Al-Lazikani , Stefan M Pfister

Cell-free DNA from germline TP53 mutation carriers reflect cancer-like fragmentation patterns.

Nature communications

Avec: Derek Wong , Maha Tageldein , Ping Luo , Erik Ensminger , Jeffrey Bruce , Leslie Oldfield , Haifan Gong , Nicholas William Fischer , Brianne Laverty , Vallijah Subasri , Scott Davidson , Reem Khan , Anita Villani , Adam Shlien , Raymond H Kim , David Malkin , Trevor J Pugh

Réseau de co-auteurs

David Malkin 22 collaborations

Anita Villani 17 collaborations

Scott Davidson 12 collaborations

Uri Tabori 12 collaborations

Eric Bouffet 8 collaborations

Nisha Kanwar 7 collaborations

Nicholas Light 7 collaborations

Mehdi Layeghifard 7 collaborations

Ledia Brunga 7 collaborations

Cynthia Hawkins 7 collaborations

Fabio Fuligni 6 collaborations

Nathaniel D Anderson 6 collaborations

Matthew Zatzman 6 collaborations

Melissa Edwards 6 collaborations

Melyssa Aronson 6 collaborations

Federico Comitani 5 collaborations

Kyoko E Yuki 5 collaborations

Daniel A Morgenstern 5 collaborations

Meredith S Irwin 5 collaborations

Annie Huang 5 collaborations

Sumedha Sudhaman 5 collaborations

Jiil Chung 5 collaborations

Vanessa Bianchi 5 collaborations

David Samuel 5 collaborations

David S Ziegler 5 collaborations

An Van Damme 5 collaborations

Kim E Nichols 5 collaborations

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Martin Komosa 3 collaborations

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Paul Gibson 1 collaboration

Ronald Grant 1 collaboration

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Grant D Stewart 1 collaboration

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Xiaoling He 1 collaboration

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Stephen X Skapek 1 collaboration

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Javed Khan 1 collaboration

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Carol Burke 1 collaboration

None None 1 collaboration

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David S Shulman 1 collaboration

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Kelly M Bailey 1 collaboration

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Masanori Hayashi 1 collaboration

Alexander J R Bishop 1 collaboration

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Patrick J Leavey 1 collaboration

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Ryan D Roberts 1 collaboration

Franck Tirode 1 collaboration

Richard Gorlick 1 collaboration

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Damon Reed 1 collaboration

Elizabeth R Lawlor 1 collaboration

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Carol Portwine 1 collaboration

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Masayuki Nakamori 1 collaboration

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Hideki Hayakawa 1 collaboration

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