Carmen Argmann

Affiliations
  • Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
  • Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Publications (36)

Dietary restriction in the long-chain acyl-CoA dehydrogenase knockout mouse.

Molecular genetics and metabolism reports
Avec: Eugène F Diekman , Michel van Weeghel , Mayte Suárez-Fariñas , Carmen Argmann , Pablo Ranea-Robles , Ronald J A Wanders , Gepke Visser , Ingeborg van der Made , Esther E Creemers , Sander M Houten

Meta-analysis of sample-level dbGaP data reveals novel shared genetic link between body height and Crohn's disease.

Human genetics
Avec: Antonio Di Narzo , Itziar Frades , Heidi M Crane , Paul K Crane , Jean-Sebastian Hulot , Andrew Kasarskis , Amy Hart , Carmen Argmann , Marla Dubinsky , Inga Peter , Ke Hao

Integration of transcriptomes of senescent cell models with multi-tissue patient samples reveals reduced COL6A3 as an inducer of senescence.

Cell reports
Avec: Radoslav Savić , Jialiang Yang , Simon Koplev , Mahru C An , Priyanka L Patel , Robert N O'Brien , Brittany N Dubose , Tetyana Dodatko , Eduard Rogatsky , Katyayani Sukhavasi , Raili Ermel , Arno Ruusalepp , Sander M Houten , Jason C Kovacic , Andrew F Stewart , Christopher B Yohn , Eric E Schadt , Remi-Martin Laberge , Johan L M Björkegren , Zhidong Tu , Carmen Argmann

Intestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms.

Gastroenterology
Avec: Alexandra E Livanos , Divya Jha , Francesca Cossarini , Ana S Gonzalez-Reiche , Minami Tokuyama , Teresa Aydillo , Tommaso L Parigi , Mark S Ladinsky , Irene Ramos , Katie Dunleavy , Brian Lee , Rebekah E Dixon , Steven T Chen , Gustavo Martinez-Delgado , Satish Nagula , Emily A Bruce , Huaibin M Ko , Benjamin S Glicksberg , Girish Nadkarni , Elisabet Pujadas , Jason Reidy , Steven Naymagon , Ari Grinspan , Jawad Ahmad , Michael Tankelevich , Yaron Bram , Ronald Gordon , Keshav Sharma , Jane Houldsworth , Graham J Britton , Alice Chen-Liaw , Matthew P Spindler , Tamar Plitt , Pei Wang , Andrea Cerutti , Jeremiah J Faith , Jean-Frederic Colombel , Ephraim Kenigsberg , Carmen Argmann , Miriam Merad , Sacha Gnjatic , Noam Harpaz , Silvio Danese , Carlos Cordon-Cardo , Adeeb Rahman , Robert E Schwartz , Nikhil A Kumta , Alessio Aghemo , Pamela J Bjorkman , Francesca Petralia , Harm van Bakel , Adolfo Garcia-Sastre , Saurabh Mehandru

Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2-related Disease.

Gastroenterology
Avec: Mayte Suárez-Fariñas , Minami Tokuyama , Gabrielle Wei , Ruiqi Huang , Alexandra Livanos , Divya Jha , Anais Levescot , Haritz Irizar , Roman Kosoy , Sascha Cording , Wenhui Wang , Bojan Losic , Ryan C Ungaro , Antonio Di'Narzo , Gustavo Martinez-Delgado , Maria Suprun , Michael J Corley , Aleksandar Stojmirovic , Sander M Houten , Lauren Peters , Mark Curran , Carrie Brodmerkel , Jacqueline Perrigoue , Joshua R Friedman , Ke Hao , Eric E Schadt , Jun Zhu , Huaibin M Ko , Judy Cho , Marla C Dubinsky , Bruce E Sands , Lishomwa Ndhlovu , Nadine Cerf-Bensusan , Andrew Kasarskis , Jean-Frederic Colombel , Noam Harpaz , Carmen Argmann , Saurabh Mehandru

Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity.

Nature medicine
Avec: Mathieu Uzzan , Jerome C Martin , Luka Mesin , Alexandra E Livanos , Tomas Castro-Dopico , Ruiqi Huang , Francesca Petralia , Giuliana Magri , Shashi Kumar , Qing Zhao , Adam K Rosenstein , Minami Tokuyama , Keshav Sharma , Ryan Ungaro , Roman Kosoy , Divya Jha , Jeremy Fischer , Harpriya Singh , Mary E Keir , Nandhini Ramamoorthi , William E O'Gorman , Benjamin L Cohen , Adeeb Rahman , Francesca Cossarini , Akihiro Seki , Louise Leyre , Sonia Tejedor Vaquero , Sakteesh Gurunathan , Emilie K Grasset , Bojan Losic , Marla Dubinsky , Alexander J Greenstein , Zoe Gottlieb , Peter Legnani , James George , Haritz Irizar , Aleksandar Stojmirovic , Carrie Brodmerkel , Andrew Kasarkis , Bruce E Sands , Glaucia Furtado , Sergio A Lira , Zewen K Tuong , Huaibin M Ko , Andrea Cerutti , Charles O Elson , Menna R Clatworthy , Miriam Merad , Mayte Suárez-Fariñas , Carmen Argmann , Jason A Hackney , Gabriel D Victora , Gwendalyn J Randolph , Ephraim Kenigsberg , Jean Frederic Colombel , Saurabh Mehandru

Disrupting the DREAM complex enables proliferation of adult human pancreatic β cells.

The Journal of clinical investigation
Avec: Peng Wang , Esra Karakose , Carmen Argmann , Huan Wang , Metodi Balev , Rachel I Brody , Hembly G Rivas , Xinyue Liu , Olivia Wood , Hongtao Liu , Lauryn Choleva , Dan Hasson , Emily Bernstein , Joao A Paulo , Donald K Scott , Luca Lambertini , James A DeCaprio , Andrew F Stewart

Multimodal single-cell analyses reveal mechanisms of perianal fistula in diverse patients with Crohn's disease.

Med (New York, N.Y.)
Avec: Rachel M Levantovsky , Christopher Tastad , Jiayu Zhang , Kyle Gettler , Ksenija Sabic , Robert Werner , Colleen Chasteau , Ujunwa Korie , Diana Paguay , Michelle Bao , Huajun Han , Neha Maskey , Sayali Talware , Manishkumar Patel , Carmen Argmann , Mayte Suarez-Farinas , Noam Harpaz , Ling-Shiang Chuang , Judy H Cho

Gastrointestinal germinal center B cell depletion and reduction in IgA

Science immunology
Avec: Francesca Cossarini , Joan Shang , Azra Krek , Zainab Al-Taie , Ruixue Hou , Pablo Canales-Herrerias , Minami Tokuyama , Michael Tankelevich , Adam Tillowitz , Divya Jha , Alexandra E Livanos , Louise Leyre , Mathieu Uzzan , Gustavo Martinez-Delgado , Matthew D Taylor , Keshav Sharma , Arno R Bourgonje , Michael Cruz , Giorgio Ioannou , Travis Dawson , Darwin D'Souza , Seunghee Kim-Schulze , Ahmed Akm , Judith A Aberg , Benjamin K Chen , Douglas S Kwon , Sacha Gnjatic , Alexandros D Polydorides , Andrea Cerutti , Carmen Argmann , Ivan Vujkovic-Cvijin , Mayte Suarez-Fariñas , Francesca Petralia , Jeremiah J Faith , Saurabh Mehandru

Cytotoxic lymphocytes are dysregulated in multisystem inflammatory syndrome in children.

medRxiv : the preprint server for health sciences
Avec: Noam D Beckmann , Phillip H Comella , Esther Cheng , Lauren Lepow , Aviva G Beckmann , Konstantinos Mouskas , Nicole W Simons , Gabriel E Hoffman , Nancy J Francoeur , Diane Marie Del Valle , Gurpawan Kang , Emily Moya , Lillian Wilkins , Jessica Le Berichel , Christie Chang , Robert Marvin , Sharlene Calorossi , Alona Lansky , Laura Walker , Nancy Yi , Alex Yu , Matthew Hartnett , Melody Eaton , Sandra Hatem , Hajra Jamal , Alara Akyatan , Alexandra Tabachnikova , Lora E Liharska , Liam Cotter , Brian Fennessey , Akhil Vaid , Guillermo Barturen , Scott R Tyler , Hardik Shah , Ying-Chih Wang , Shwetha Hara Sridhar , Juan Soto , Swaroop Bose , Kent Madrid , Ethan Ellis , Elyze Merzier , Konstantinos Vlachos , Nataly Fishman , Manying Tin , Melissa Smith , Hui Xie , Manishkumar Patel , Kimberly Argueta , Jocelyn Harris , Neha Karekar , Craig Batchelor , Jose Lacunza , Mahlet Yishak , Kevin Tuballes , Leisha Scott , Arvind Kumar , Suraj Jaladanki , Ryan Thompson , Evan Clark , Bojan Losic , Auteur inconnu , Jun Zhu , Wenhui Wang , Andrew Kasarskis , Benjamin S Glicksberg , Girish Nadkarni , Dusan Bogunovic , Cordelia Elaiho , Sandeep Gangadharan , George Ofori-Amanfo , Kasey Alesso-Carra , Kenan Onel , Karen M Wilson , Carmen Argmann , Marta E Alarcón-Riquelme , Thomas U Marron , Adeeb Rahman , Seunghee Kim-Schulze , Sacha Gnjatic , Bruce D Gelb , Miriam Merad , Robert Sebra , Eric E Schadt , Alexander W Charney

Very Early Onset Inflammatory Bowel Disease: A Clinical Approach With a Focus on the Role of Genetics and Underlying Immune Deficiencies.

Inflammatory bowel diseases
Avec: Jodie Ouahed , Elizabeth Spencer , Daniel Kotlarz , Dror S Shouval , Matthew Kowalik , Kaiyue Peng , Michael Field , Leslie Grushkin-Lerner , Sung-Yun Pai , Athos Bousvaros , Judy Cho , Carmen Argmann , Eric Schadt , Dermot P B Mcgovern , Michal Mokry , Edward Nieuwenhuis , Hans Clevers , Fiona Powrie , Holm Uhlig , Christoph Klein , Aleixo Muise , Marla Dubinsky , Scott B Snapper

Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets.

Gastroenterology
Avec: Antonio F Di'Narzo , Sander M Houten , Roman Kosoy , Ruiqi Huang , Frédéric M Vaz , Ruixue Hou , Gabrielle Wei , Wenhui Wang , Phillip H Comella , Tetyana Dodatko , Eduard Rogatsky , Aleksandar Stojmirovic , Carrie Brodmerkel , Jacqueline Perrigoue , Amy Hart , Mark Curran , Joshua R Friedman , Jun Zhu , Manasi Agrawal , Judy Cho , Ryan Ungaro , Marla C Dubinsky , Bruce E Sands , Mayte Suárez-Fariñas , Eric E Schadt , Jean-Frédéric Colombel , Andrew Kasarskis , Ke Hao , Carmen Argmann

Murine deficiency of peroxisomal L-bifunctional protein (EHHADH) causes medium-chain 3-hydroxydicarboxylic aciduria and perturbs hepatic cholesterol homeostasis.

Cellular and molecular life sciences : CMLS
Avec: Pablo Ranea-Robles , Sara Violante , Carmen Argmann , Tetyana Dodatko , Dipankar Bhattacharya , Hongjie Chen , Chunli Yu , Scott L Friedman , Michelle Puchowicz , Sander M Houten

Biopsy and blood-based molecular biomarker of inflammation in IBD.

Gut
Avec: Carmen Argmann , Ruixue Hou , Ryan C Ungaro , Haritz Irizar , Zainab Al-Taie , Ruiqi Huang , Roman Kosoy , Swati Venkat , Won-Min Song , Antonio F Di'Narzo , Bojan Losic , Ke Hao , Lauren Peters , Phillip H Comella , Gabrielle Wei , Ashish Atreja , Milind Mahajan , Alina Iuga , Prerak T Desai , Patrick Branigan , Aleksandar Stojmirovic , Jacqueline Perrigoue , Carrie Brodmerkel , Mark Curran , Joshua R Friedman , Amy Hart , Esi Lamousé-Smith , Jan Wehkamp , Saurabh Mehandru , Eric E Schadt , Bruce E Sands , Marla C Dubinsky , Jean-Frederic Colombel , Andrew Kasarskis , Mayte Suárez-Fariñas

A mechanistic framework for cardiometabolic and coronary artery diseases.

Nature cardiovascular research
Avec: Simon Koplev , Marcus Seldin , Katyayani Sukhavasi , Raili Ermel , Shichao Pang , Lingyao Zeng , Sean Bankier , Antonio Di Narzo , Haoxiang Cheng , Vamsidhar Meda , Angela Ma , Husain Talukdar , Ariella Cohain , Letizia Amadori , Carmen Argmann , Sander M Houten , Oscar Franzén , Giuseppe Mocci , Omar A Meelu , Kiyotake Ishikawa , Carl Whatling , Anamika Jain , Rajeev Kumar Jain , Li-Ming Gan , Chiara Giannarelli , Panos Roussos , Ke Hao , Heribert Schunkert , Tom Michoel , Arno Ruusalepp , Eric E Schadt , Jason C Kovacic , Aldon J Lusis , Johan L M Björkegren

Gut microbiota density influences host physiology and is shaped by host and microbial factors.

eLife
Avec: Eduardo J Contijoch , Graham J Britton , Chao Yang , Ilaria Mogno , Zhihua Li , Ruby Ng , Sean R Llewellyn , Sheela Hira , Crystal Johnson , Keren M Rabinowitz , Revital Barkan , Iris Dotan , Robert P Hirten , Shih-Chen Fu , Yuying Luo , Nancy Yang , Tramy Luong , Philippe R Labrias , Sergio Lira , Inga Peter , Ari Grinspan , Jose C Clemente , Roman Kosoy , Seunghee Kim-Schulze , Xiaochen Qin , Anabella Castillo , Amanda Hurley , Ashish Atreja , Jason Rogers , Farah Fasihuddin , Merjona Saliaj , Amy Nolan , Pamela Reyes-Mercedes , Carina Rodriguez , Sarah Aly , Kenneth Santa-Cruz , Lauren Peters , Mayte Suárez-Fariñas , Ruiqi Huang , Ke Hao , Jun Zhu , Bin Zhang , Bojan Losic , Haritz Irizar , Won-Min Song , Antonio Di Narzo , Wenhui Wang , Benjamin L Cohen , Christopher DiMaio , David Greenwald , Steven Itzkowitz , Aimee Lucas , James Marion , Elana Maser , Ryan Ungaro , Steven Naymagon , Joshua Novak , Brijen Shah , Thomas Ullman , Peter Rubin , James George , Peter Legnani , Shannon E Telesco , Joshua R Friedman , Carrie Brodmerkel , Scott Plevy , Judy H Cho , Jean-Frederic Colombel , Eric E Schadt , Carmen Argmann , Marla Dubinsky , Andrew Kasarskis , Bruce Sands , Jeremiah J Faith

High-Throughput Identification of the Plasma Proteomic Signature of Inflammatory Bowel Disease.

Journal of Crohn's & colitis
Avec: Antonio F Di Narzo , Carrie Brodmerkel , Shannon E Telesco , Carmen Argmann , Lauren A Peters , Katherine Li , Brian Kidd , Joel Dudley , Judy Cho , Eric E Schadt , Andrew Kasarskis , Radu Dobrin , Ke Hao

Stratification of risk of progression to colectomy in ulcerative colitis via measured and predicted gene expression.

American journal of human genetics
Avec: Angela Mo , Sini Nagpal , Kyle Gettler , Talin Haritunians , Mamta Giri , Yael Haberman , Rebekah Karns , Jarod Prince , Dalia Arafat , Nai-Yun Hsu , Ling-Shiang Chuang , Carmen Argmann , Andrew Kasarskis , Mayte Suarez-Farinas , Nathan Gotman , Emebet Mengesha , Suresh Venkateswaran , Paul A Rufo , Susan S Baker , Cary G Sauer , James Markowitz , Marian D Pfefferkorn , Joel R Rosh , Brendan M Boyle , David R Mack , Robert N Baldassano , Sapana Shah , Neal S LeLeiko , Melvin B Heyman , Anne M Griffiths , Ashish S Patel , Joshua D Noe , Sonia Davis Thomas , Bruce J Aronow , Thomas D Walters , Dermot P B McGovern , Jeffrey S Hyams , Subra Kugathasan , Judy H Cho , Lee A Denson , Greg Gibson

NOX1 is essential for TNFα-induced intestinal epithelial ROS secretion and inhibits M cell signatures.

Gut
Avec: Nai-Yun Hsu , Shikha Nayar , Kyle Gettler , Sayali Talware , Mamta Giri , Isaac Alter , Carmen Argmann , Ksenija Sabic , Tin Htwe Thin , Huai-Bin Mabel Ko , Robert Werner , Christopher Tastad , Thaddeus Stappenbeck , Aline Azabdaftari , Holm H Uhlig , Ling-Shiang Chuang , Judy H Cho

Gut-associated lymphoid tissue attrition associates with response to anti-α4β7 therapy in ulcerative colitis.

bioRxiv : the preprint server for biology
Avec: Pablo Canales-Herrerias , Mathieu Uzzan , Akihiro Seki , Rafael S Czepielewski , Bram Verstockt , Alexandra Livanos , Fiona Raso , Alexandra Dunn , Daniel Dai , Andrew Wang , Zainab Al-Taie , Jerome Martin , Huaibin M Ko , Minami Tokuyama , Michael Tankelevich , Hadar Meringer , Francesca Cossarini , Divya Jha , Azra Krek , John D Paulsen , M Zuber Nakadar , Joshua Wong , Emma C Erlich , Emily J Onufer , Beth A Helmink , Keshav Sharma , Adam Rosenstein , Grace Chung , Travis Dawson , Julius Juarez , Vijay Yajnik , Andrea Cerutti , Jeremiah Faith , Mayte Suarez-Farinas , Carmen Argmann , Francesca Petralia , Gwendalyn J Randolph , Alexandros D Polydorides , Andrea Reboldi , Jean Frederic Colombel , Saurabh Mehandru

Gene coexpression networks reveal a broad role for lncRNAs in inflammatory bowel disease.

JCI insight
Avec: John L Johnson , Davit Sargsyan , Eric M Neiman , Amy Hart , Aleksandar Stojmirovic , Roman Kosoy , Haritz Irizar , Mayte Suárez-Fariñas , Won-Min Song , Carmen Argmann , Stefan Avey , Liraz Shmuel-Galia , Tim Vierbuchen , Gerold Bongers , Yu Sun , Leonard Edelstein , Jacqueline Perrigoue , Jennifer E Towne , Aisling O'Hara Hall , Katherine A Fitzgerald , Kasper Hoebe

HIV-1 infection is associated with depletion of germinal center B cells and a decrease in IgA

bioRxiv : the preprint server for biology
Avec: Francesca Cossarini , Joan Shang , Azra Krek , Zainab Al-Taie , Ruixue Hou , Pablo Canales-Herrerias , Minami Tokuyama , Michael Tankelevich , Adam Tillowiz , Divya Jha , Alexandra E Livanos , Louise Leyre , Mathieu Uzzan , Gustavo Martinez-Delgado , Matthew Tylor , Keshav Sharma , Arno R Bourgonje , Michael Cruz , Giorgio Ioannou , Travis Dawson , Darwin D'Souza , Seunghee Kim-Schulze , Ahmed Akm , Judith A Aberg , Benjamin K Chen , Sacha Gnjatic , Alexandros D Polydorides , Andrea Cerutti , Carmen Argmann , Ivan Vujkovic-Cvijin , Mayte Suarez-Farinas , Francesca Petralia , Jeremiah J Faith , Saurabh Mehandru

Gut-associated lymphoid tissue attrition associates with response to anti-α4β7 therapy in ulcerative colitis.

Science immunology
Avec: Pablo Canales-Herrerias , Mathieu Uzzan , Akihiro Seki , Rafael S Czepielewski , Bram Verstockt , Alexandra E Livanos , Fiona Raso , Alexandra Dunn , Daniel Dai , Andrew Wang , Zainab Al-Taie , Jerome Martin , Thomas Laurent , Huaibin M Ko , Minami Tokuyama , Michael Tankelevich , Hadar Meringer , Francesca Cossarini , Divya Jha , Azra Krek , John D Paulsen , Matthew D Taylor , Mohammad Zuber Nakadar , Joshua Wong , Emma C Erlich , Rachel L Mintz , Emily J Onufer , Beth A Helmink , Keshav Sharma , Adam Rosenstein , Danielle Ganjian , Grace Chung , Travis Dawson , Julius Juarez , Vijay Yajnik , Andrea Cerutti , Jeremiah J Faith , Mayte Suarez-Farinas , Carmen Argmann , Francesca Petralia , Gwendalyn J Randolph , Alexandros D Polydorides , Andrea Reboldi , Jean-Frederic Colombel , Saurabh Mehandru

Combined Inhibition of DYRK1A, SMAD, and Trithorax Pathways Synergizes to Induce Robust Replication in Adult Human Beta Cells.

Cell metabolism
Avec: Peng Wang , Esra Karakose , Hongtao Liu , Ethan Swartz , Courtney Ackeifi , Viktor Zlatanic , Jessica Wilson , Bryan J González , Aaron Bender , Karen K Takane , Lillian Ye , George Harb , Felicia Pagliuca , Dirk Homann , Dieter Egli , Carmen Argmann , Donald K Scott , Adolfo Garcia-Ocaña , Andrew F Stewart

Peroxisomal L-bifunctional protein (EHHADH) deficiency causes male-specific kidney hypertrophy and proximal tubular injury in mice.

Kidney360
Avec: Pablo Ranea-Robles , Kensey Portman , Aaron Bender , Kyung Lee , John Cijiang He , David J Mulholland , Carmen Argmann , Sander M Houten

Molecular Characterization of Limited Ulcerative Colitis Reveals Novel Biology and Predictors of Disease Extension.

Gastroenterology
Avec: Carmen Argmann , Minami Tokuyama , Ryan C Ungaro , Ruiqi Huang , Ruixue Hou , Sakteesh Gurunathan , Roman Kosoy , Antonio Di'Narzo , Wenhui Wang , Bojan Losic , Haritz Irizar , Lauren Peters , Aleksandar Stojmirovic , Gabrielle Wei , Phillip H Comella , Mark Curran , Carrie Brodmerkel , Joshua R Friedman , Ke Hao , Eric E Schadt , Jun Zhu , Judy Cho , Noam Harpaz , Marla C Dubinsky , Bruce E Sands , Andrew Kasarskis , Saurabh Mehandru , Jean-Frederic Colombel , Mayte Suárez-Fariñas

An Integrated Taxonomy for Monogenic Inflammatory Bowel Disease.

Gastroenterology
Avec: Chrissy Bolton , Christopher S Smillie , Sumeet Pandey , Rasa Elmentaite , Gabrielle Wei , Carmen Argmann , Dominik Aschenbrenner , Kylie R James , Dermot P B McGovern , Marina Macchi , Judy Cho , Dror S Shouval , Jochen Kammermeier , Sibylle Koletzko , Krithika Bagalopal , Melania Capitani , Athena Cavounidis , Elisabete Pires , Carl Weidinger , James McCullagh , Peter D Arkwright , Wolfram Haller , Britta Siegmund , Lauren Peters , Luke Jostins , Simon P L Travis , Carl A Anderson , Scott Snapper , Christoph Klein , Eric Schadt , Matthias Zilbauer , Ramnik Xavier , Sarah Teichmann , Aleixo M Muise , Aviv Regev , Holm H Uhlig

Aberrant methylation underlies insulin gene expression in human insulinoma.

Nature communications
Avec: Esra Karakose , Huan Wang , William Inabnet , Rajesh V Thakker , Steven Libutti , Gustavo Fernandez-Ranvier , Hyunsuk Suh , Mark Stevenson , Yayoi Kinoshita , Michael Donovan , Yevgeniy Antipin , Yan Li , Xiaoxiao Liu , Fulai Jin , Peng Wang , Andrew Uzilov , Carmen Argmann , Eric E Schadt , Andrew F Stewart , Donald K Scott , Luca Lambertini

Polygenic risk score for alcohol drinking behavior improves prediction of inflammatory bowel disease risk.

Human molecular genetics
Avec: Antonio F Di Narzo , Amy Hart , Roman Kosoy , Lauren Peters , Aleksandar Stojmirovic , Haoxiang Cheng , Zhongyang Zhang , Mingxu Shan , Judy Cho , Andrew Kasarskis , Carmen Argmann , Inga Peter , Eric E Schadt , Ke Hao

Glutaric aciduria type 3 is a naturally occurring biochemical trait in inbred mice of 129 substrains.

Molecular genetics and metabolism
Avec: João Leandro , Aaron Bender , Tetyana Dodatko , Carmen Argmann , Chunli Yu , Sander M Houten

Gastrointestinal involvement attenuates COVID-19 severity and mortality.

medRxiv : the preprint server for health sciences
Avec: Alexandra E Livanos , Divya Jha , Francesca Cossarini , Ana S Gonzalez-Reiche , Minami Tokuyama , Teresa Aydillo , Tommaso L Parigi , Irene Ramos , Katie Dunleavy , Brian Lee , Rebekah Dixon , Steven T Chen , Gustavo Martinez-Delgado , Satish Nagula , Huaibin M Ko , Benjamin S Glicksberg , Girish Nadkarni , Elisabet Pujadas , Jason Reidy , Steven Naymagon , Ari Grinspan , Jawad Ahmad , Michael Tankelevich , Ronald Gordon , Keshav Sharma , Jane Houldsworth , Graham J Britton , Alice Chen-Liaw , Matthew P Spindler , Tamar Plitt , Pei Wang , Andrea Cerutti , Jeremiah J Faith , Jean-Frederic Colombel , Ephraim Kenigsberg , Carmen Argmann , Miriam Merad , Sacha Gnjatic , Noam Harpaz , Silvio Danese , Carlos Cordon-Cardo , Adeeb Rahman , Nikhil A Kumta , Alessio Aghemo , Francesca Petralia , Harm van Bakel , Adolfo Garcia-Sastre , Saurabh Mehandru

Downregulation of exhausted cytotoxic T cells in gene expression networks of multisystem inflammatory syndrome in children.

Nature communications
Avec: Noam D Beckmann , Phillip H Comella , Esther Cheng , Lauren Lepow , Aviva G Beckmann , Scott R Tyler , Konstantinos Mouskas , Nicole W Simons , Gabriel E Hoffman , Nancy J Francoeur , Diane Marie Del Valle , Gurpawan Kang , Anh Do , Emily Moya , Lillian Wilkins , Jessica Le Berichel , Christie Chang , Robert Marvin , Sharlene Calorossi , Alona Lansky , Laura Walker , Nancy Yi , Alex Yu , Jonathan Chung , Matthew Hartnett , Melody Eaton , Sandra Hatem , Hajra Jamal , Alara Akyatan , Alexandra Tabachnikova , Lora E Liharska , Liam Cotter , Brian Fennessy , Akhil Vaid , Guillermo Barturen , Hardik Shah , Ying-Chih Wang , Shwetha Hara Sridhar , Juan Soto , Swaroop Bose , Kent Madrid , Ethan Ellis , Elyze Merzier , Konstantinos Vlachos , Nataly Fishman , Manying Tin , Melissa Smith , Hui Xie , Manishkumar Patel , Kai Nie , Kimberly Argueta , Jocelyn Harris , Neha Karekar , Craig Batchelor , Jose Lacunza , Mahlet Yishak , Kevin Tuballes , Ieisha Scott , Arvind Kumar , Suraj Jaladanki , Charuta Agashe , Ryan Thompson , Evan Clark , Bojan Losic , Lauren Peters , Auteur inconnu , Panagiotis Roussos , Jun Zhu , Wenhui Wang , Andrew Kasarskis , Benjamin S Glicksberg , Girish Nadkarni , Dusan Bogunovic , Cordelia Elaiho , Sandeep Gangadharan , George Ofori-Amanfo , Kasey Alesso-Carra , Kenan Onel , Karen M Wilson , Carmen Argmann , Supinda Bunyavanich , Marta E Alarcón-Riquelme , Thomas U Marron , Adeeb Rahman , Seunghee Kim-Schulze , Sacha Gnjatic , Bruce D Gelb , Miriam Merad , Robert Sebra , Eric E Schadt , Alexander W Charney

A mitochondrial long-chain fatty acid oxidation defect leads to transfer RNA uncharging and activation of the integrated stress response in the mouse heart.

Cardiovascular research
Avec: Pablo Ranea-Robles , Natalya N Pavlova , Aaron Bender , Andrea S Pereyra , Jessica M Ellis , Brandon Stauffer , Chunli Yu , Craig B Thompson , Carmen Argmann , Michelle Puchowicz , Sander M Houten

T3 and glucose increase expression of phosphoenolpyruvate carboxykinase (PCK1) leading to increased β-cell proliferation.

Molecular metabolism
Avec: Liora S Katz , Carmen Argmann , Luca Lambertini , Donald K Scott

A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.

Communications biology
Avec: Lauren A Peters , Joshua R Friedman , Aleksandar Stojmirovic , Jacob Hagen , Sander Houten , Tetyana Dodatko , Mariana P Amaro , Paula Restrepo , Zhi Chai , J Rodrigo Mora , Holly A Raymond , Mark Curran , Radu Dobrin , Anuk Das , Huabao Xiong , Eric E Schadt , Carmen Argmann , Bojan Losic

Myeloid cell influx into the colonic epithelium is associated with disease severity and non-response to anti-Tumor Necrosis Factor Therapy in patients with Ulcerative Colitis.

bioRxiv : the preprint server for biology
Avec: Divya Jha , Zainab Al-Taie , Azra Krek , Shadi Toghi Eshghi , Aurelie Fantou , Thomas Laurent , Michael Tankelevich , Xuan Cao , Hadar Meringer , Alexandra E Livanos , Minami Tokuyama , Francesca Cossarini , Arnaud Bourreille , Regis Josien , Ruixue Hou , Pablo Canales-Herrerias , Ryan C Ungaro , Maia Kayal , James Marion , Alexandros D Polydorides , Huaibin M Ko , Darwin D'souza , Raphael Merand , Seunghee Kim-Schulze , Jason A Hackney , Allen Nguyen , Jacqueline M McBride , Guo-Cheng Yuan , Jean Frederic Colombel , Jerome C Martin , Carmen Argmann , Mayte Suárez-Fariñas , Francesca Petralia , Saurabh Mehandru

Réseau de co-auteurs

Eric E Schadt 13 collaborations
Andrew Kasarskis 11 collaborations
Saurabh Mehandru 11 collaborations
Minami Tokuyama 10 collaborations
Mayte Suárez-Fariñas 9 collaborations
Sander M Houten 9 collaborations
Ke Hao 9 collaborations
Divya Jha 9 collaborations
Francesca Cossarini 8 collaborations
Francesca Petralia 8 collaborations
Roman Kosoy 8 collaborations
Bojan Losic 8 collaborations
Aleksandar Stojmirovic 8 collaborations
Alexandra E Livanos 7 collaborations
Huaibin M Ko 7 collaborations
Michael Tankelevich 7 collaborations
Keshav Sharma 7 collaborations
Andrea Cerutti 7 collaborations
Jean-Frederic Colombel 7 collaborations
Lauren Peters 7 collaborations
Carrie Brodmerkel 7 collaborations
Judy Cho 7 collaborations
Jeremiah J Faith 6 collaborations
Sacha Gnjatic 6 collaborations
Ruiqi Huang 6 collaborations
Haritz Irizar 6 collaborations
Wenhui Wang 6 collaborations
Joshua R Friedman 6 collaborations
Jun Zhu 6 collaborations
Zainab Al-Taie 6 collaborations
Ruixue Hou 6 collaborations
Seunghee Kim-Schulze 6 collaborations
Amy Hart 5 collaborations
Tetyana Dodatko 5 collaborations
Gustavo Martinez-Delgado 5 collaborations
Miriam Merad 5 collaborations
Noam Harpaz 5 collaborations
Adeeb Rahman 5 collaborations
Gabrielle Wei 5 collaborations
Mark Curran 5 collaborations
Bruce E Sands 5 collaborations
Mathieu Uzzan 5 collaborations
Mayte Suarez-Farinas 5 collaborations
Azra Krek 5 collaborations
Pablo Canales-Herrerias 5 collaborations
Alexandros D Polydorides 5 collaborations
Phillip H Comella 5 collaborations
Pablo Ranea-Robles 4 collaborations
Marla Dubinsky 4 collaborations
Andrew F Stewart 4 collaborations
Benjamin S Glicksberg 4 collaborations
Girish Nadkarni 4 collaborations
Ryan C Ungaro 4 collaborations
Jacqueline Perrigoue 4 collaborations
Marla C Dubinsky 4 collaborations
Donald K Scott 4 collaborations
Judy H Cho 4 collaborations
Travis Dawson 4 collaborations
Aaron Bender 4 collaborations
Antonio Di Narzo 3 collaborations
Inga Peter 3 collaborations
Steven Naymagon 3 collaborations
Ari Grinspan 3 collaborations
Graham J Britton 3 collaborations
Ephraim Kenigsberg 3 collaborations
Ryan Ungaro 3 collaborations
Akihiro Seki 3 collaborations
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Gwendalyn J Randolph 3 collaborations
Jean Frederic Colombel 3 collaborations
Peng Wang 3 collaborations
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Chunli Yu 3 collaborations
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Hadar Meringer 3 collaborations
Simon Koplev 2 collaborations
Eduard Rogatsky 2 collaborations
Katyayani Sukhavasi 2 collaborations
Raili Ermel 2 collaborations
Arno Ruusalepp 2 collaborations
Jason C Kovacic 2 collaborations
Johan L M Björkegren 2 collaborations
Ana S Gonzalez-Reiche 2 collaborations
Teresa Aydillo 2 collaborations
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Matthew P Spindler 2 collaborations
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Pei Wang 2 collaborations
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Harm van Bakel 2 collaborations
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Antonio Di'Narzo 2 collaborations
Jerome C Martin 2 collaborations
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Huan Wang 2 collaborations
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None None 2 collaborations
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Holm H Uhlig 2 collaborations
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Eugène F Diekman 1 collaboration
Michel van Weeghel 1 collaboration
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Shashi Kumar 1 collaboration
Qing Zhao 1 collaboration
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Scott L Friedman 1 collaboration
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Carl Whatling 1 collaboration
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Chao Yang 1 collaboration
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Zhihua Li 1 collaboration
Ruby Ng 1 collaboration
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Sheela Hira 1 collaboration
Crystal Johnson 1 collaboration
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Revital Barkan 1 collaboration
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Nancy Yang 1 collaboration
Tramy Luong 1 collaboration
Philippe R Labrias 1 collaboration
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Pamela Reyes-Mercedes 1 collaboration
Carina Rodriguez 1 collaboration
Sarah Aly 1 collaboration
Kenneth Santa-Cruz 1 collaboration
Bin Zhang 1 collaboration
Christopher DiMaio 1 collaboration
David Greenwald 1 collaboration
Steven Itzkowitz 1 collaboration
Aimee Lucas 1 collaboration
Elana Maser 1 collaboration
Joshua Novak 1 collaboration
Brijen Shah 1 collaboration
Thomas Ullman 1 collaboration
Peter Rubin 1 collaboration
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Katherine Li 1 collaboration
Brian Kidd 1 collaboration
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Angela Mo 1 collaboration
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Marian D Pfefferkorn 1 collaboration
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David R Mack 1 collaboration
Robert N Baldassano 1 collaboration
Sapana Shah 1 collaboration
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Anne M Griffiths 1 collaboration
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Lee A Denson 1 collaboration
Greg Gibson 1 collaboration
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Jeremiah Faith 1 collaboration
John L Johnson 1 collaboration
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Stefan Avey 1 collaboration
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Tim Vierbuchen 1 collaboration
Gerold Bongers 1 collaboration
Yu Sun 1 collaboration
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Aisling O'Hara Hall 1 collaboration
Katherine A Fitzgerald 1 collaboration
Kasper Hoebe 1 collaboration
Adam Tillowiz 1 collaboration
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Karen K Takane 1 collaboration
Lillian Ye 1 collaboration
George Harb 1 collaboration
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Kyung Lee 1 collaboration
John Cijiang He 1 collaboration
David J Mulholland 1 collaboration
Chrissy Bolton 1 collaboration
Christopher S Smillie 1 collaboration
Sumeet Pandey 1 collaboration
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Dominik Aschenbrenner 1 collaboration
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Marina Macchi 1 collaboration
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Carl Weidinger 1 collaboration
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Carl A Anderson 1 collaboration
Scott Snapper 1 collaboration
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Ramnik Xavier 1 collaboration
Sarah Teichmann 1 collaboration
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Steven Libutti 1 collaboration
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Mark Stevenson 1 collaboration
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Michael Donovan 1 collaboration
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Yan Li 1 collaboration
Xiaoxiao Liu 1 collaboration
Fulai Jin 1 collaboration
Andrew Uzilov 1 collaboration
Zhongyang Zhang 1 collaboration
Mingxu Shan 1 collaboration
João Leandro 1 collaboration
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Anh Do 1 collaboration
Jonathan Chung 1 collaboration
Brian Fennessy 1 collaboration
Kai Nie 1 collaboration
Ieisha Scott 1 collaboration
Charuta Agashe 1 collaboration
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Supinda Bunyavanich 1 collaboration
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Andrea S Pereyra 1 collaboration
Jessica M Ellis 1 collaboration
Brandon Stauffer 1 collaboration
Craig B Thompson 1 collaboration
Liora S Katz 1 collaboration
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Paula Restrepo 1 collaboration
Zhi Chai 1 collaboration
J Rodrigo Mora 1 collaboration
Holly A Raymond 1 collaboration
Anuk Das 1 collaboration
Huabao Xiong 1 collaboration
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Xuan Cao 1 collaboration
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