Jennifer Pett-Ridge

Affiliations

Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA.

Publications (67)

The Functional Significance of Bacterial Predators.

mBio

Avec: Bruce A Hungate , Jane C Marks , Mary E Power , Egbert Schwartz , Kees Jan van Groenigen , Steven J Blazewicz , Peter Chuckran , Paul Dijkstra , Brianna K Finley , Mary K Firestone , Megan Foley , Alex Greenlon , Michaela Hayer , Kirsten S Hofmockel , Benjamin J Koch , Michelle C Mack , Rebecca L Mau , Samantha N Miller , Ember M Morrissey , Jeffrey R Propster , Alicia M Purcell , Ella Sieradzki , Evan P Starr , Bram W G Stone , César Terrer , Jennifer Pett-Ridge

VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature.

PeerJ

Avec: Olivier Zablocki , Michelle Michelsen , Marie Burris , Natalie Solonenko , Joanna Warwick-Dugdale , Romik Ghosh , Jennifer Pett-Ridge , Matthew B Sullivan , Ben Temperton

The temperature sensitivity of soil: microbial biodiversity, growth, and carbon mineralization.

The ISME journal

Avec: Chao Wang , Ember M Morrissey , Rebecca L Mau , Michaela Hayer , Juan Piñeiro , Michelle C Mack , Jane C Marks , Sheryl L Bell , Samantha N Miller , Egbert Schwartz , Paul Dijkstra , Benjamin J Koch , Bram W Stone , Alicia M Purcell , Steven J Blazewicz , Kirsten S Hofmockel , Jennifer Pett-Ridge , Bruce A Hungate

Experimental testing of hypotheses for temperature- and pH-based niche specialization of ammonia oxidizing archaea and bacteria.

Environmental microbiology

Avec: A Aigle , C Gubry-Rangin , C Thion , K Y Estera-Molina , H Richmond , J Pett-Ridge , M K Firestone , G W Nicol , J I Prosser

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP.

Frontiers in microbiology

Avec: Anne E Dekas , Alma E Parada , Xavier Mayali , Jed A Fuhrman , Jessica Wollard , Peter K Weber , Jennifer Pett-Ridge

Hyphae move matter and microbes to mineral microsites: Integrating the hyphosphere into conceptual models of soil organic matter stabilization.

Global change biology

Avec: Craig R See , Adrienne B Keller , Sarah E Hobbie , Peter G Kennedy , Peter K Weber , Jennifer Pett-Ridge

Vitamin B

bioRxiv : the preprint server for biology

Avec: Zachary F Hallberg , Alexa M Nicolas , Zoila I Alvarez-Aponte , Kenny C Mok , Ella T Sieradzki , Jennifer Pett-Ridge , Jillian F Banfield , Hans K Carlson , Mary K Firestone , Michiko E Taga

From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology.

Environmental microbiome

Avec: Winston E Anthony , Steven D Allison , Caitlin M Broderick , Luciana Chavez Rodriguez , Alicia Clum , Hugh Cross , Emiley Eloe-Fadrosh , Sarah Evans , Dawson Fairbanks , Rachel Gallery , Júlia Brandão Gontijo , Jennifer Jones , Jason McDermott , Jennifer Pett-Ridge , Sydne Record , Jorge Luiz Mazza Rodrigues , William Rodriguez-Reillo , Katherine L Shek , Tina Takacs-Vesbach , Jeffrey L Blanchard

Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues.

Ecological applications : a publication of the Ecological Society of America

Avec: Marshall D McDaniel , Jeffrey A Bird , Jennifer Pett-Ridge , Erika Marin-Spiotta , Tom M Schmidt , A Stuart Grandy

Unraveling the functional dark matter through global metagenomics.

Nature

Avec: Georgios A Pavlopoulos , Fotis A Baltoumas , Sirui Liu , Oguz Selvitopi , Antonio Pedro Camargo , Stephen Nayfach , Ariful Azad , Simon Roux , Lee Call , Natalia N Ivanova , I Min Chen , David Paez-Espino , Evangelos Karatzas , Auteur inconnu , Ioannis Iliopoulos , Konstantinos Konstantinidis , James M Tiedje , Jennifer Pett-Ridge , David Baker , Axel Visel , Christos A Ouzounis , Sergey Ovchinnikov , Aydin Buluç , Nikos C Kyrpides

Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development.

mSystems

Avec: Ella T Sieradzki , Erin E Nuccio , Jennifer Pett-Ridge , Mary K Firestone

Chip-SIP: Stable Isotope Probing Analyzed with rRNA-Targeted Microarrays and NanoSIMS.

Methods in molecular biology (Clifton, N.J.)

Avec: Xavier Mayali , Peter K Weber , Erin Nuccio , Jory Lietard , Mark Somoza , Steven J Blazewicz , Jennifer Pett-Ridge

Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons.

mBio

Avec: Tess E Brewer , Emma L Aronson , Keshav Arogyaswamy , Sharon A Billings , Jon K Botthoff , Ashley N Campbell , Nicholas C Dove , Dawson Fairbanks , Rachel E Gallery , Stephen C Hart , Jason Kaye , Gary King , Geoffrey Logan , Kathleen A Lohse , Mia R Maltz , Emilio Mayorga , Caitlin O'Neill , Sarah M Owens , Aaron Packman , Jennifer Pett-Ridge , Alain F Plante , Daniel D Richter , Whendee L Silver , Wendy H Yang , Noah Fierer

Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle.

Nature microbiology

Avec: Javier A Ceja-Navarro , Ulas Karaoz , Markus Bill , Zhao Hao , Richard A White , Abelardo Arellano , Leila Ramanculova , Timothy R Filley , Timothy D Berry , Mark E Conrad , Meredith Blackwell , Carrie D Nicora , Young-Mo Kim , Patrick N Reardon , Mary S Lipton , Joshua N Adkins , Jennifer Pett-Ridge , Eoin L Brodie

Active virus-host interactions at sub-freezing temperatures in Arctic peat soil.

Microbiome

Avec: Gareth Trubl , Jeffrey A Kimbrel , Jose Liquet-Gonzalez , Erin E Nuccio , Peter K Weber , Jennifer Pett-Ridge , Janet K Jansson , Mark P Waldrop , Steven J Blazewicz

Root Carbon Interaction with Soil Minerals Is Dynamic, Leaving a Legacy of Microbially Derived Residues.

Environmental science & technology

Avec: Rachel A Neurath , Jennifer Pett-Ridge , Ilexis Chu-Jacoby , Donald Herman , Thea Whitman , Peter S Nico , Andrew S Lipton , Jennifer Kyle , Malak M Tfaily , Alison Thompson , Mary K Firestone

Routes to roots: direct evidence of water transport by arbuscular mycorrhizal fungi to host plants.

The New phytologist

Avec: Anne Kakouridis , John A Hagen , Megan P Kan , Stefania Mambelli , Lewis J Feldman , Donald J Herman , Peter K Weber , Jennifer Pett-Ridge , Mary K Firestone

Label-Free Multiphoton Imaging of Microbes in Root, Mineral, and Soil Matrices with Time-Gated Coherent Raman and Fluorescence Lifetime Imaging.

Environmental science & technology

Avec: Janghyuk Lee , Rachel Hestrin , Erin E Nuccio , Keith D Morrison , Christina E Ramon , Ty J Samo , Jennifer Pett-Ridge , Sonny S Ly , Ted A Laurence , Peter K Weber

Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems.

mSystems

Avec: Alex Greenlon , Ella Sieradzki , Olivier Zablocki , Benjamin J Koch , Megan M Foley , Jeffrey A Kimbrel , Bruce A Hungate , Steven J Blazewicz , Erin E Nuccio , Christine L Sun , Aaron Chew , Cynthia-Jeanette Mancilla , Matthew B Sullivan , Mary Firestone , Jennifer Pett-Ridge , Jillian F Banfield

Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Christian Santos-Medellín , Katerina Estera-Molina , Mengting Yuan , Jennifer Pett-Ridge , Mary K Firestone , Joanne B Emerson

A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil.

Nature communications

Avec: Alexa M Nicolas , Ella T Sieradzki , Jennifer Pett-Ridge , Jillian F Banfield , Michiko E Taga , Mary K Firestone , Steven J Blazewicz

Improved Characterization of Soil Organic Matter by Integrating FT-ICR MS, Liquid Chromatography Tandem Mass Spectrometry, and Molecular Networking: A Case Study of Root Litter Decay under Drought Conditions.

Analytical chemistry

Avec: Nicole DiDonato , Albert Rivas-Ubach , William Kew , Noah W Sokol , Chaevien S Clendinen , Jennifer E Kyle , Carmen Enid Martínez , Megan M Foley , Nikola Tolić , Jennifer Pett-Ridge , Ljiljana Paša-Tolić

Nutrient and moisture limitations reveal keystone metabolites linking rhizosphere metabolomes and microbiomes.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Nameer R Baker , Kateryna Zhalnina , Mengting Yuan , Don Herman , Javier A Ceja-Navarro , Joelle Sasse , Jacob S Jordan , Benjamin P Bowen , Liyou Wu , Christina Fossum , Aaron Chew , Ying Fu , Malay Saha , Jizhong Zhou , Jennifer Pett-Ridge , Trent R Northen , Mary K Firestone

Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design.

mSystems

Avec: Ella T Sieradzki , Benjamin J Koch , Alex Greenlon , Rohan Sachdeva , Rex R Malmstrom , Rebecca L Mau , Steven J Blazewicz , Mary K Firestone , Kirsten S Hofmockel , Egbert Schwartz , Bruce A Hungate , Jennifer Pett-Ridge

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Evan P Starr , Erin E Nuccio , Jennifer Pett-Ridge , Jillian F Banfield , Mary K Firestone

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil.

The ISME journal

Avec: Steven J Blazewicz , Bruce A Hungate , Benjamin J Koch , Erin E Nuccio , Ember Morrissey , Eoin L Brodie , Egbert Schwartz , Jennifer Pett-Ridge , Mary K Firestone

Evolutionary history constrains microbial traits across environmental variation.

Nature ecology & evolution

Avec: Ember M Morrissey , Rebecca L Mau , Michaela Hayer , Xiao-Jun Allen Liu , Egbert Schwartz , Paul Dijkstra , Benjamin J Koch , Kara Allen , Steven J Blazewicz , Kirsten Hofmockel , Jennifer Pett-Ridge , Bruce A Hungate

From pools to flow: The PROMISE framework for new insights on soil carbon cycling in a changing world.

Global change biology

Avec: Bonnie G Waring , Benjamin N Sulman , Sasha Reed , A Peyton Smith , Colin Averill , Courtney A Creamer , Daniela F Cusack , Steven J Hall , Julie D Jastrow , Andrea Jilling , Kenneth M Kemner , Markus Kleber , Xiao-Jun Allen Liu , Jennifer Pett-Ridge , Marjorie Schulz

Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption.

The ISME journal

Avec: Colin T Bates , Arthur Escalas , Jialiang Kuang , Lauren Hale , Yuan Wang , Don Herman , Erin E Nuccio , Xiaoling Wan , Amrita Bhattacharyya , Ying Fu , Renmao Tian , Gangsheng Wang , Daliang Ning , Yunfeng Yang , Liyou Wu , Jennifer Pett-Ridge , Malay Saha , Kelly Craven , Eoin L Brodie , Mary Firestone , Jizhong Zhou

Decreased growth of wild soil microbes after 15 years of transplant-induced warming in a montane meadow.

Global change biology

Avec: Alicia M Purcell , Michaela Hayer , Benjamin J Koch , Rebecca L Mau , Steven J Blazewicz , Paul Dijkstra , Michelle C Mack , Jane C Marks , Ember M Morrissey , Jennifer Pett-Ridge , Rachel L Rubin , Egbert Schwartz , Natasja C van Gestel , Bruce A Hungate

Life and death in the soil microbiome: how ecological processes influence biogeochemistry.

Nature reviews. Microbiology

Avec: Noah W Sokol , Eric Slessarev , Gianna L Marschmann , Alexa Nicolas , Steven J Blazewicz , Eoin L Brodie , Mary K Firestone , Megan M Foley , Rachel Hestrin , Bruce A Hungate , Benjamin J Koch , Bram W Stone , Matthew B Sullivan , Olivier Zablocki , Auteur inconnu , Jennifer Pett-Ridge

Initial soil organic carbon stocks govern changes in soil carbon: Reality or artifact?

Global change biology

Avec: Eric W Slessarev , Allegra Mayer , Courtland Kelly , Katerina Georgiou , Jennifer Pett-Ridge , Erin E Nuccio

Plant-associated fungi support bacterial resilience following water limitation.

The ISME journal

Avec: Rachel Hestrin , Megan Kan , Marissa Lafler , Jessica Wollard , Jeffrey A Kimbrel , Prasun Ray , Steven J Blazewicz , Rhona Stuart , Kelly Craven , Mary Firestone , Erin E Nuccio , Jennifer Pett-Ridge

Life history strategies among soil bacteria-dichotomy for few, continuum for many.

The ISME journal

Avec: Bram W G Stone , Paul Dijkstra , Brianna K Finley , Raina Fitzpatrick , Megan M Foley , Michaela Hayer , Kirsten S Hofmockel , Benjamin J Koch , Junhui Li , Xiao Jun A Liu , Ayla Martinez , Rebecca L Mau , Jane Marks , Victoria Monsaint-Queeney , Ember M Morrissey , Jeffrey Propster , Jennifer Pett-Ridge , Alicia M Purcell , Egbert Schwartz , Bruce A Hungate

A standardized quantitative analysis strategy for stable isotope probing metagenomics.

mSystems

Avec: Dariia Vyshenska , Pranav Sampara , Kanwar Singh , Andy Tomatsu , W Berkeley Kauffman , Erin E Nuccio , Steven J Blazewicz , Jennifer Pett-Ridge , Katherine B Louie , Neha Varghese , Matthew Kellom , Alicia Clum , Robert Riley , Simon Roux , Emiley A Eloe-Fadrosh , Ryan M Ziels , Rex R Malmstrom

Growth rate as a link between microbial diversity and soil biogeochemistry.

Nature ecology & evolution

Avec: Megan M Foley , Bram W G Stone , Tristan A Caro , Noah W Sokol , Benjamin J Koch , Steven J Blazewicz , Paul Dijkstra , Michaela Hayer , Kirsten Hofmockel , Brianna K Finley , Michelle Mack , Jane Marks , Rebecca L Mau , Victoria Monsaint-Queeney , Ember Morrissey , Jeffrey Propster , Alicia Purcell , Egbert Schwartz , Jennifer Pett-Ridge , Noah Fierer , Bruce A Hungate

Predictive genomic traits for bacterial growth in culture versus actual growth in soil.

The ISME journal

Avec: Junhui Li , Rebecca L Mau , Paul Dijkstra , Benjamin J Koch , Egbert Schwartz , Xiao-Jun Allen Liu , Ember M Morrissey , Steven J Blazewicz , Jennifer Pett-Ridge , Bram W Stone , Michaela Hayer , Bruce A Hungate

Manganese co-localizes with calcium and phosphorus in

The Journal of biological chemistry

Avec: Munkhtsetseg Tsednee , Madeli Castruita , Patrice A Salomé , Ajay Sharma , Brianne E Lewis , Stefan R Schmollinger , Daniela Strenkert , Kristen Holbrook , Marisa S Otegui , Kaustav Khatua , Sayani Das , Ankona Datta , Si Chen , Christina Ramon , Martina Ralle , Peter K Weber , Timothy L Stemmler , Jennifer Pett-Ridge , Brian M Hoffman , Sabeeha S Merchant

Niche differentiation is spatially and temporally regulated in the rhizosphere.

The ISME journal

Avec: Erin E Nuccio , Evan Starr , Ulas Karaoz , Eoin L Brodie , Jizhong Zhou , Susannah G Tringe , Rex R Malmstrom , Tanja Woyke , Jillian F Banfield , Mary K Firestone , Jennifer Pett-Ridge

NanoSIP: NanoSIMS Applications for Microbial Biology.

Methods in molecular biology (Clifton, N.J.)

Avec: Jennifer Pett-Ridge , Peter K Weber

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop.

Microbiome

Avec: Javier A Ceja-Navarro , Yuan Wang , Daliang Ning , Abelardo Arellano , Leila Ramanculova , Mengting Maggie Yuan , Alyssa Byer , Kelly D Craven , Malay C Saha , Eoin L Brodie , Jennifer Pett-Ridge , Mary K Firestone

Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community.

Nature communications

Avec: Bram W Stone , Junhui Li , Benjamin J Koch , Steven J Blazewicz , Paul Dijkstra , Michaela Hayer , Kirsten S Hofmockel , Xiao-Jun Allen Liu , Rebecca L Mau , Ember M Morrissey , Jennifer Pett-Ridge , Egbert Schwartz , Bruce A Hungate

iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology.

ISME communications

Avec: Benjamin Bolduc , Olivier Zablocki , Jiarong Guo , Ahmed A Zayed , Dean Vik , Paramvir Dehal , Elisha M Wood-Charlson , Adam Arkin , Nirav Merchant , Jennifer Pett-Ridge , Simon Roux , Matthew Vaughn , Matthew B Sullivan

Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil.

ISME communications

Avec: Erin E Nuccio , Nhu H Nguyen , Ulisses Nunes da Rocha , Xavier Mayali , Jeremy Bougoure , Peter K Weber , Eoin Brodie , Mary Firestone , Jennifer Pett-Ridge

Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past.

The ISME journal

Avec: Marike Palmer , Jonathan K Covington , En-Min Zhou , Scott C Thomas , Neeli Habib , Cale O Seymour , Dengxun Lai , Juliet Johnston , Ameena Hashimi , Jian-Yu Jiao , Alise R Muok , Lan Liu , Wen-Dong Xian , Xiao-Yang Zhi , Meng-Meng Li , Leslie P Silva , Benjamin P Bowen , Katherine Louie , Ariane Briegel , Jennifer Pett-Ridge , Peter K Weber , Elitza I Tocheva , Tanja Woyke , Trent R Northen , Xavier Mayali , Wen-Jun Li , Brian P Hedlund

Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass.

The ISME journal

Avec: Ella T Sieradzki , Erin E Nuccio , Jennifer Pett-Ridge , Mary K Firestone

Melanization slows the rapid movement of fungal necromass carbon and nitrogen into both bacterial and fungal decomposer communities and soils.

mSystems

Avec: François Maillard , Talia J Michaud , Craig R See , Lang C DeLancey , Steven J Blazewicz , Jeffrey A Kimbrel , Jennifer Pett-Ridge , Peter G Kennedy

Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils.

Nature ecology & evolution

Avec: Christian Santos-Medellín , Steven J Blazewicz , Jennifer Pett-Ridge , Mary K Firestone , Joanne B Emerson

Astrovirology: how viruses enhance our understanding of life in the Universe.

International journal of astrobiology

Avec: Gareth Trubl , Kenneth M Stedman , Kathryn F Bywaters , Emily E Matula , Pacifica Sommers , Simon Roux , Nancy Merino , John Yin , Jason T Kaelber , Aram Avila-Herrera , Peter Anto Johnson , John Christy Johnson , Schuyler Borges , Peter K Weber , Jennifer Pett-Ridge , Penelope J Boston

Metatranscriptomes of California grassland soil microbial communities in response to rewetting.

Microbiology resource announcements

Avec: Peter F Chuckran , Katerina Estera-Molina , Marcel Huntemann , Brian Foster , Simon Roux , Supratim Mukherjee , Patrick Hajek , T B K Reddy , Chris Daum , I-Min A Chen , Christa Pennacchio , Emiley A Eloe-Fadrosh , Paul Dijkstra , Mary K Firestone , Steven J Blazewicz , Jennifer Pett-Ridge

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.

Scientific data

Avec: Volkan Sevim , Juna Lee , Robert Egan , Alicia Clum , Hope Hundley , Janey Lee , R Craig Everroad , Angela M Detweiler , Brad M Bebout , Jennifer Pett-Ridge , Markus Göker , Alison E Murray , Stephen R Lindemann , Hans-Peter Klenk , Ronan O'Malley , Matthew Zane , Jan-Fang Cheng , Alex Copeland , Christopher Daum , Esther Singer , Tanja Woyke

System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris.

BMC bioinformatics

Avec: Ali Navid , Yongqin Jiao , Sergio Ernesto Wong , Jennifer Pett-Ridge

The role of soil redox conditions in microbial phosphorus cycling in humid tropical forests.

Ecology

Avec: Avner Gross , Yang Lin , Peter K Weber , Jennifer Pett-Ridge , Whendee L Silver

Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil.

mSphere

Avec: Evan P Starr , Shengjing Shi , Steven J Blazewicz , Benjamin J Koch , Alexander J Probst , Bruce A Hungate , Jennifer Pett-Ridge , Mary K Firestone , Jillian F Banfield

Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations.

Microbiome

Avec: Anneliek M Ter Horst , Christian Santos-Medellín , Jackson W Sorensen , Laura A Zinke , Rachel M Wilson , Eric R Johnston , Gareth Trubl , Jennifer Pett-Ridge , Steven J Blazewicz , Paul J Hanson , Jeffrey P Chanton , Christopher W Schadt , Joel E Kostka , Joanne B Emerson

A trade-off between plant and soil carbon storage under elevated CO

Nature

Avec: C Terrer , R P Phillips , B A Hungate , J Rosende , J Pett-Ridge , M E Craig , K J van Groenigen , T F Keenan , B N Sulman , B D Stocker , P B Reich , A F A Pellegrini , E Pendall , H Zhang , R D Evans , Y Carrillo , J B Fisher , K Van Sundert , Sara Vicca , R B Jackson

Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches.

mBio

Avec: Mengting Maggie Yuan , Anne Kakouridis , Evan Starr , Nhu Nguyen , Shengjing Shi , Jennifer Pett-Ridge , Erin Nuccio , Jizhong Zhou , Mary Firestone

Plants and mycorrhizal symbionts acquire substantial soil nitrogen from gaseous ammonia transport.

The New phytologist

Avec: Rachel Hestrin , Peter K Weber , Jennifer Pett-Ridge , Johannes Lehmann

An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea.

Nature communications

Avec: Steffen Buessecker , Marike Palmer , Dengxun Lai , Joshua Dimapilis , Xavier Mayali , Damon Mosier , Jian-Yu Jiao , Daniel R Colman , Lisa M Keller , Emily St John , Michelle Miranda , Cristina Gonzalez , Lizett Gonzalez , Christian Sam , Christopher Villa , Madeline Zhuo , Nicholas Bodman , Fernando Robles , Eric S Boyd , Alysia D Cox , Brian St Clair , Zheng-Shuang Hua , Wen-Jun Li , Anna-Louise Reysenbach , Matthew B Stott , Peter K Weber , Jennifer Pett-Ridge , Anne E Dekas , Brian P Hedlund , Jeremy A Dodsworth

Terabase-Scale Coassembly of a Tropical Soil Microbiome.

Microbiology spectrum

Avec: Robert Riley , Robert M Bowers , Antonio Pedro Camargo , Ashley Campbell , Rob Egan , Emiley A Eloe-Fadrosh , Brian Foster , Steven Hofmeyr , Marcel Huntemann , Matthew Kellom , Jeffrey A Kimbrel , Leonid Oliker , Katherine Yelick , Jennifer Pett-Ridge , Asaf Salamov , Neha J Varghese , Alicia Clum

The predictive power of phylogeny on growth rates in soil bacterial communities.

ISME communications

Avec: Jeth Walkup , Chansotheary Dang , Rebecca L Mau , Michaela Hayer , Egbert Schwartz , Bram W Stone , Kirsten S Hofmockel , Benjamin J Koch , Alicia M Purcell , Jennifer Pett-Ridge , Chao Wang , Bruce A Hungate , Ember M Morrissey

Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota.

Environmental microbiology

Avec: Alma E Parada , Xavier Mayali , Peter K Weber , Jessica Wollard , Alyson E Santoro , Jed A Fuhrman , Jennifer Pett-Ridge , Anne E Dekas

Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community.

Oecologia

Avec: Bram W Stone , Steven J Blazewicz , Benjamin J Koch , Paul Dijkstra , Michaela Hayer , Kirsten S Hofmockel , Xiao Jun Allen Liu , Rebecca L Mau , Jennifer Pett-Ridge , Egbert Schwartz , Bruce A Hungate

HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.

Microbiome

Avec: Erin E Nuccio , Steven J Blazewicz , Marissa Lafler , Ashley N Campbell , Anne Kakouridis , Jeffrey A Kimbrel , Jessica Wollard , Dariia Vyshenska , Robert Riley , Andy Tomatsu , Rachel Hestrin , Rex R Malmstrom , Mary Firestone , Jennifer Pett-Ridge

Arbuscular mycorrhiza convey significant plant carbon to a diverse hyphosphere microbial food web and mineral-associated organic matter.

The New phytologist

Avec: Anne Kakouridis , Mengting Yuan , Erin E Nuccio , John A Hagen , Christina A Fossum , Madeline L Moore , Katerina Y Estera-Molina , Peter S Nico , Peter K Weber , Jennifer Pett-Ridge , Mary K Firestone

Predictions of rhizosphere microbiome dynamics with a genome-informed and trait-based energy budget model.

Nature microbiology

Avec: Gianna L Marschmann , Jinyun Tang , Kateryna Zhalnina , Ulas Karaoz , Heejung Cho , Beatrice Le , Jennifer Pett-Ridge , Eoin L Brodie

Soil microbial community response to corrinoids is shaped by a natural reservoir of vitamin B12.

The ISME journal

Avec: Zachary F Hallberg , Alexa M Nicolas , Zoila I Alvarez-Aponte , Kenny C Mok , Ella T Sieradzki , Jennifer Pett-Ridge , Jillian F Banfield , Hans K Carlson , Mary K Firestone , Michiko E Taga

Réseau de co-auteurs

Steven J Blazewicz 23 collaborations

Mary K Firestone 20 collaborations

Peter K Weber 16 collaborations

Bruce A Hungate 15 collaborations

Benjamin J Koch 15 collaborations

Erin E Nuccio 15 collaborations

Egbert Schwartz 12 collaborations

Rebecca L Mau 11 collaborations

Paul Dijkstra 10 collaborations

Michaela Hayer 10 collaborations

Ember M Morrissey 8 collaborations

Kirsten S Hofmockel 7 collaborations

Jillian F Banfield 7 collaborations

Eoin L Brodie 7 collaborations

Bram W Stone 6 collaborations

Xavier Mayali 6 collaborations

Ella T Sieradzki 6 collaborations

Jeffrey A Kimbrel 6 collaborations

Mary Firestone 6 collaborations

Alicia M Purcell 5 collaborations

Simon Roux 5 collaborations

Rachel Hestrin 5 collaborations

Megan M Foley 5 collaborations

Olivier Zablocki 4 collaborations

Matthew B Sullivan 4 collaborations

Jessica Wollard 4 collaborations

Alicia Clum 4 collaborations

Anne Kakouridis 4 collaborations

Jizhong Zhou 4 collaborations

Rex R Malmstrom 4 collaborations

Xiao-Jun Allen Liu 4 collaborations

Jane C Marks 3 collaborations

Brianna K Finley 3 collaborations

Alex Greenlon 3 collaborations

Michelle C Mack 3 collaborations

Evan P Starr 3 collaborations

Bram W G Stone 3 collaborations

Anne E Dekas 3 collaborations

Alexa M Nicolas 3 collaborations

Michiko E Taga 3 collaborations

Javier A Ceja-Navarro 3 collaborations

Ulas Karaoz 3 collaborations

Gareth Trubl 3 collaborations

Christian Santos-Medellín 3 collaborations

Mengting Yuan 3 collaborations

Joanne B Emerson 3 collaborations

Noah W Sokol 3 collaborations

Junhui Li 3 collaborations

Robert Riley 3 collaborations

Emiley A Eloe-Fadrosh 3 collaborations

Tanja Woyke 3 collaborations

Samantha N Miller 2 collaborations

Ella Sieradzki 2 collaborations

Chao Wang 2 collaborations

J Pett-Ridge 2 collaborations

Alma E Parada 2 collaborations

Jed A Fuhrman 2 collaborations

Craig R See 2 collaborations

Peter G Kennedy 2 collaborations

Zachary F Hallberg 2 collaborations

Zoila I Alvarez-Aponte 2 collaborations

Kenny C Mok 2 collaborations

Hans K Carlson 2 collaborations

Dawson Fairbanks 2 collaborations

Antonio Pedro Camargo 2 collaborations

None None 2 collaborations

Erin Nuccio 2 collaborations

Ashley N Campbell 2 collaborations

Whendee L Silver 2 collaborations

Noah Fierer 2 collaborations

Abelardo Arellano 2 collaborations

Leila Ramanculova 2 collaborations

Peter S Nico 2 collaborations

John A Hagen 2 collaborations

Aaron Chew 2 collaborations

Katerina Estera-Molina 2 collaborations

Kateryna Zhalnina 2 collaborations

Don Herman 2 collaborations

Benjamin P Bowen 2 collaborations

Liyou Wu 2 collaborations

Ying Fu 2 collaborations

Malay Saha 2 collaborations

Trent R Northen 2 collaborations

Ember Morrissey 2 collaborations

Kirsten Hofmockel 2 collaborations

Yuan Wang 2 collaborations

Daliang Ning 2 collaborations

Kelly Craven 2 collaborations

Gianna L Marschmann 2 collaborations

Marissa Lafler 2 collaborations

Jane Marks 2 collaborations

Victoria Monsaint-Queeney 2 collaborations

Jeffrey Propster 2 collaborations

Dariia Vyshenska 2 collaborations

Andy Tomatsu 2 collaborations

Matthew Kellom 2 collaborations

Evan Starr 2 collaborations

Mengting Maggie Yuan 2 collaborations

Marike Palmer 2 collaborations

Dengxun Lai 2 collaborations

Jian-Yu Jiao 2 collaborations

Wen-Jun Li 2 collaborations

Brian P Hedlund 2 collaborations

Marcel Huntemann 2 collaborations

Brian Foster 2 collaborations

Shengjing Shi 2 collaborations

Mary E Power 1 collaboration

Kees Jan van Groenigen 1 collaboration

Peter Chuckran 1 collaboration

Megan Foley 1 collaboration

Jeffrey R Propster 1 collaboration

César Terrer 1 collaboration

Michelle Michelsen 1 collaboration

Marie Burris 1 collaboration

Natalie Solonenko 1 collaboration

Joanna Warwick-Dugdale 1 collaboration

Romik Ghosh 1 collaboration

Ben Temperton 1 collaboration

Juan Piñeiro 1 collaboration

Sheryl L Bell 1 collaboration

A Aigle 1 collaboration

C Gubry-Rangin 1 collaboration

C Thion 1 collaboration

K Y Estera-Molina 1 collaboration

H Richmond 1 collaboration

M K Firestone 1 collaboration

G W Nicol 1 collaboration

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